Mercurial > repos > galaxyp > openms_spectrafilternormalizer
comparison OMSSAAdapter.patch @ 9:8904d228594a draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
author | galaxyp |
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date | Thu, 03 Sep 2020 16:24:06 +0000 |
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8:77fd678d74f2 | 9:8904d228594a |
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1 --- OMSSAAdapter.xml 2020-06-16 15:51:40.315400730 +0200 | |
2 +++ /tmp/OMSSAAdapter.xml 2020-06-16 15:50:23.536086074 +0200 | |
3 @@ -22,6 +22,7 @@ | |
4 mkdir database && | |
5 ln -s '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' && | |
6 | |
7 +makeblastdb -dbtype prot -in 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' && | |
8 ## Main program call | |
9 | |
10 set -o pipefail && |