diff SpectraFilterNormalizer.xml @ 0:1557ac8060b8 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SpectraFilterNormalizer.xml	Wed Mar 01 12:29:50 2017 -0500
@@ -0,0 +1,47 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--Proposed Tool Section: [Identification]-->
+<tool id="SpectraFilterNormalizer" name="SpectraFilterNormalizer" version="2.1.0">
+  <description>Normalizes intensity of peak spectra.</description>
+  <macros>
+    <token name="@EXECUTABLE@">SpectraFilterNormalizer</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="references"/>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>SpectraFilterNormalizer
+
+#if $param_in:
+  -in $param_in
+#end if
+#if $param_out:
+  -out $param_out
+#end if
+#if $param_algorithm_method:
+  -algorithm:method $param_algorithm_method
+#end if
+#if $adv_opts.adv_opts_selector=='advanced':
+    #if $adv_opts.param_force:
+  -force
+#end if
+#end if
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
+    <param name="param_algorithm_method" display="radio" type="select" optional="False" value="to_one" label="Normalize via dividing by TIC ('to_TIC') per spectrum or normalize to max" help="(-method) intensity of one ('to_one') per spectrum">
+      <option value="to_one" selected="true">to_one</option>
+      <option value="to_TIC">to_TIC</option>
+    </param>
+    <expand macro="advanced_options">
+      <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
+    </expand>
+  </inputs>
+  <outputs>
+    <data name="param_out" format="mzml"/>
+  </outputs>
+  <help>Normalizes intensity of peak spectra.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterNormalizer.html</help>
+</tool>