Mercurial > repos > galaxyp > openms_spectrafilternormalizer
view SpectraFilterNormalizer.xml @ 6:5a2591e63b0e draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
author | galaxyp |
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date | Tue, 20 Mar 2018 15:01:57 -0400 |
parents | 7a973f4ac2d2 |
children | d82bd07d8190 |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Identification]--> <tool id="SpectraFilterNormalizer" name="SpectraFilterNormalizer" version="2.3.0"> <description>Normalizes intensity of peak spectra.</description> <macros> <token name="@EXECUTABLE@">SpectraFilterNormalizer</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command>SpectraFilterNormalizer #if $param_in: -in $param_in #end if #if $param_out: -out $param_out #end if #if $param_algorithm_method: -algorithm:method #if " " in str($param_algorithm_method): "$param_algorithm_method" #else $param_algorithm_method #end if #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if </command> <inputs> <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> <param name="param_algorithm_method" display="radio" type="select" optional="False" value="to_one" label="Normalize via dividing by TIC ('to_TIC') per spectrum or normalize to max" help="(-method) intensity of one ('to_one') per spectrum"> <option value="to_one" selected="true">to_one</option> <option value="to_TIC">to_TIC</option> </param> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out" format="mzml"/> </outputs> <help>Normalizes intensity of peak spectra. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterNormalizer.html</help> </tool>