Mercurial > repos > galaxyp > openms_spectrafilterthresholdmower
comparison SpectraFilterThresholdMower.xml @ 0:d4fa92b05b88 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author | galaxyp |
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date | Wed, 01 Mar 2017 12:28:12 -0500 |
parents | |
children | 3efb67a73366 |
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-1:000000000000 | 0:d4fa92b05b88 |
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1 <?xml version='1.0' encoding='UTF-8'?> | |
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | |
3 <!--Proposed Tool Section: [Identification]--> | |
4 <tool id="SpectraFilterThresholdMower" name="SpectraFilterThresholdMower" version="2.1.0"> | |
5 <description>Applies thresholdfilter to peak spectra.</description> | |
6 <macros> | |
7 <token name="@EXECUTABLE@">SpectraFilterThresholdMower</token> | |
8 <import>macros.xml</import> | |
9 </macros> | |
10 <expand macro="references"/> | |
11 <expand macro="stdio"/> | |
12 <expand macro="requirements"/> | |
13 <command>SpectraFilterThresholdMower | |
14 | |
15 #if $param_in: | |
16 -in $param_in | |
17 #end if | |
18 #if $param_out: | |
19 -out $param_out | |
20 #end if | |
21 #if $param_algorithm_threshold: | |
22 -algorithm:threshold $param_algorithm_threshold | |
23 #end if | |
24 #if $adv_opts.adv_opts_selector=='advanced': | |
25 #if $adv_opts.param_force: | |
26 -force | |
27 #end if | |
28 #end if | |
29 </command> | |
30 <inputs> | |
31 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> | |
32 <param name="param_algorithm_threshold" type="float" value="0.05" label="Intensity threshold, peaks below this threshold are discarded" help="(-threshold) "/> | |
33 <expand macro="advanced_options"> | |
34 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> | |
35 </expand> | |
36 </inputs> | |
37 <outputs> | |
38 <data name="param_out" format="mzml"/> | |
39 </outputs> | |
40 <help>Applies thresholdfilter to peak spectra. | |
41 | |
42 | |
43 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterThresholdMower.html</help> | |
44 </tool> |