Mercurial > repos > galaxyp > openms_spectrafilterwindowmower
view SpectraFilterWindowMower.xml @ 2:bcbf93eb5a1e draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 1e51bed3a1c10c67ef0404216608e9333db04c64
author | galaxyp |
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date | Wed, 18 Oct 2017 15:41:02 -0400 |
parents | a1eb5b310e4a |
children | 746db2c7b499 |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Identification]--> <tool id="SpectraFilterWindowMower" name="SpectraFilterWindowMower" version="2.2.0"> <description>Applies thresholdfilter to peak spectra.</description> <macros> <token name="@EXECUTABLE@">SpectraFilterWindowMower</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command>SpectraFilterWindowMower #if $param_in: -in $param_in #end if #if $param_out: -out $param_out #end if #if $param_algorithm_windowsize: -algorithm:windowsize $param_algorithm_windowsize #end if #if $param_algorithm_peakcount: -algorithm:peakcount $param_algorithm_peakcount #end if #if $param_algorithm_movetype: -algorithm:movetype #if " " in str($param_algorithm_movetype): "$param_algorithm_movetype" #else $param_algorithm_movetype #end if #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if </command> <inputs> <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> <param name="param_algorithm_windowsize" type="float" value="50.0" label="The size of the sliding window along the m/z axis" help="(-windowsize) "/> <param name="param_algorithm_peakcount" type="integer" value="2" label="The number of peaks that should be kept" help="(-peakcount) "/> <param name="param_algorithm_movetype" display="radio" type="select" optional="False" value="slide" label="Whether sliding window (one peak steps) or jumping window (window size steps) should be used" help="(-movetype) "> <option value="slide" selected="true">slide</option> <option value="jump">jump</option> </param> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out" format="mzml"/> </outputs> <help>Applies thresholdfilter to peak spectra. For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterWindowMower.html</help> </tool>