comparison SpectraSTSearchAdapter.xml @ 6:ab22e4296eaf draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

5:6af2aab4321f

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>SpectraSTSearchAdapter

-spectra_files
  #for token in $param_spectra_files:
    $token
  #end for

#end if
    #if $adv_opts.param_force:
  -force
#end if
#end if
</command>
  <inputs>
    <param name="param_spectra_files" type="data" format="mzml,mzxml,mzData,dta,msp" multiple="true" optional="False" size="30" label="File names(s) of spectra to be searched" help="(-spectra_files) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>

    <data name="param_output_files" format="txt"/>
  </outputs>
  <help>Interface to the SEARCH Mode of the SpectraST executable


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SpectraSTSearchAdapter.html</help>
</tool>

6:ab22e4296eaf

    <import>macros.xml</import>
  </macros>
  <expand macro="references"/>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command detect_errors="aggressive"><![CDATA[SpectraSTSearchAdapter

-spectra_files
  #for token in $param_spectra_files:
    $token
  #end for

#end if
    #if $adv_opts.param_force:
  -force
#end if
#end if
]]></command>
  <inputs>
    <param name="param_spectra_files" type="data" format="mzml,mzxml,mzData,dta,msp" multiple="true" optional="False" size="30" label="File names(s) of spectra to be searched" help="(-spectra_files) ">
      <sanitizer>
        <valid initial="string.printable">
          <remove value="'"/>

    <data name="param_output_files" format="txt"/>
  </outputs>
  <help>Interface to the SEARCH Mode of the SpectraST executable


For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_SpectraSTSearchAdapter.html</help>
</tool>