Mercurial > repos > galaxyp > openms_spectrastsearchadapter
comparison OMSSAAdapter.patch @ 12:4d189842ebfc draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
| author | galaxyp |
|---|---|
| date | Thu, 01 Dec 2022 19:03:12 +0000 |
| parents | 76adea1e0fde |
| children |
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| 11:76adea1e0fde | 12:4d189842ebfc |
|---|---|
| 1 --- OMSSAAdapter.xml 2020-06-16 15:51:40.315400730 +0200 | |
| 2 +++ /tmp/OMSSAAdapter.xml 2020-06-16 15:50:23.536086074 +0200 | |
| 3 @@ -22,6 +22,7 @@ | |
| 4 mkdir database && | |
| 5 ln -s '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' && | |
| 6 | |
| 7 +makeblastdb -dbtype prot -in 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' && | |
| 8 ## Main program call | |
| 9 | |
| 10 set -o pipefail && |