view macros.xml @ 6:ab22e4296eaf draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

<?xml version='1.0' encoding='UTF-8'?>
<macros>
  <xml name="requirements">
    <requirements>
      <requirement type="package" version="2.3">openms</requirement>
      <requirement type="package" version="15.12.15.2">xtandem</requirement>
      <requirement type="package" version="1.0">fido</requirement>
      <requirement type="package" version="2017.07.21">msgf_plus</requirement>
      <yield/>
    </requirements>
  </xml>
  <xml name="stdio">
    <stdio>
      <regex match="Could not allocate metaspace" level="fatal_oom" description="Java memory Exception"/>
      <regex match="Cannot create VM thread" level="fatal_oom" description="Java memory Exception"/>
      <regex match="qUncompress: could not allocate enough memory to uncompress data" level="fatal_oom" description="Java memory Exception"/>
    </stdio>
  </xml>
  <xml name="references">
    <citations>
      <citation type="doi">doi:10.1186/1471-2105-9-163</citation>
    </citations>
  </xml>
  <xml name="advanced_options">
    <conditional name="adv_opts">
      <param name="adv_opts_selector" type="select" label="Advanced Options">
        <option value="basic" selected="True">Hide Advanced Options</option>
        <option value="advanced">Show Advanced Options</option>
      </param>
      <when value="basic"/>
      <when value="advanced">
        <yield/>
      </when>
    </conditional>
  </xml>
</macros>