# CTD type # Galaxy type # the following lines need to be at the top in order to ensure # correct translation Galaxy->CTD type for the ambiguous cases # (should only be relevant for the autogenerated tests [which # do not set the ftype of the inputs]) txt txt tsv tabular ##analysisXML # XTandemAdapter output is named xml in OMS (which is to unspecific) and bioml in Galaxy .. so this is renamed via hardcoded parameters bioml xml consensusXML consensusxml # TODO csv is problematic, since csv often actually means tsv .. but not always csv csv ##dat dta dta dta2d dta2d edta edta fa fasta fas fasta fasta fasta FASTA fasta featureXML featurexml featurexml featurexml # fid html html HTML html idXML idxml ##ini txt json json kroenik kroenik mascotXML mascotxml mgf mgf mrm mrm ms sirius.ms ms2 ms2 msp msp mzData mzdata mzid mzid # important to have mzML first, since LuciphorAdapter is case sensitive https://github.com/OpenMS/OpenMS/issues/4444 mzML mzml mzml mzml mzq mzq mzTab mztab mzXML mzxml novor txt obo obo # I guess this is the idXML output of omssa omssaXML idxml osw osw OSW osw params txt paramXML paramxml fasta peff peplist peplist # TODO pep.xml should be removed with OMS 2.6 https://github.com/OpenMS/OpenMS/pull/4541 pep.xml pepxml pepXML pepxml png png PNG png protXML protxml psms psms # TODO implement or use # psq pqp pqp qcML qcml spec.xml spec.xml splib splib sqMass sqmass tandem.xml tandem trafoXML trafoxml traML traml TraML traml tab tabular ## MOVED TO TOP txt txt raw thermo.raw ## xls: SpectraSTSearchAdapter https://github.com/OpenMS/OpenMS/pull/4419 xls tsv XML xml xml xml xquest.xml xquest.xml xsd xml # TODO needs to be implemented, needs to be below xml in order that Galaxy->OMS mapping gives xml # cachedMzML xml