diff TargetedFileConverter.xml @ 6:eb22f145fae1 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty

--- a/TargetedFileConverter.xml	Tue Mar 20 15:28:35 2018 -0400
+++ b/TargetedFileConverter.xml	Fri May 17 10:26:11 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>TargetedFileConverter
+  <command detect_errors="aggressive"><![CDATA[TargetedFileConverter
 
 #if $param_in:
   -in $param_in
@@ -48,7 +48,7 @@
   -algorithm:force_invalid_mods
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="tabular,mrm,pqp,traml" optional="False" label="Input file to convert" help="(-in) &lt;br&gt; See http://www.openms.de/current_doxygen/html/UTILS_TargetedFileConverter.html for format of OpenSWATH transition TSV file or SpectraST MRM file"/>
     <param name="param_out_type" display="radio" type="select" optional="True" label="Output file type -- default: determined from file extension or content &lt;br&gt;Note: that not all conversion paths work or make sense" help="(-out_type) ">
@@ -74,5 +74,5 @@
   <help>Converts different transition files for targeted proteomics / metabolomics analysis.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_TargetedFileConverter.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_TargetedFileConverter.html</help>
 </tool>