Mercurial > repos > galaxyp > openms_textexporter
comparison TextExporter.xml @ 1:d06df685f78c draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
| author | galaxyp |
|---|---|
| date | Wed, 09 Aug 2017 09:50:36 -0400 |
| parents | be5c2f82c8ef |
| children | 33e848694dc1 |
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| 0:be5c2f82c8ef | 1:d06df685f78c |
|---|---|
| 1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> |
| 3 <!--Proposed Tool Section: [File Handling]--> | 3 <!--Proposed Tool Section: [File Handling]--> |
| 4 <tool id="TextExporter" name="TextExporter" version="2.1.0"> | 4 <tool id="TextExporter" name="TextExporter" version="2.2.0"> |
| 5 <description>Exports various XML formats to a text file.</description> | 5 <description>Exports various XML formats to a text file.</description> |
| 6 <macros> | 6 <macros> |
| 7 <token name="@EXECUTABLE@">TextExporter</token> | 7 <token name="@EXECUTABLE@">TextExporter</token> |
| 8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
| 9 </macros> | 9 </macros> |
| 23 #end if | 23 #end if |
| 24 #if $param_replacement: | 24 #if $param_replacement: |
| 25 -replacement "$param_replacement" | 25 -replacement "$param_replacement" |
| 26 #end if | 26 #end if |
| 27 #if $param_quoting: | 27 #if $param_quoting: |
| 28 -quoting $param_quoting | 28 -quoting |
| 29 #if " " in str($param_quoting): | |
| 30 "$param_quoting" | |
| 31 #else | |
| 32 $param_quoting | |
| 33 #end if | |
| 29 #end if | 34 #end if |
| 30 #if $param_no_ids: | 35 #if $param_no_ids: |
| 31 -no_ids | 36 -no_ids |
| 32 #end if | 37 #end if |
| 33 #if $param_feature_minimal: | 38 #if $param_feature_minimal: |
| 59 #end if | 64 #end if |
| 60 #if $param_consensus_features: | 65 #if $param_consensus_features: |
| 61 -consensus:features $param_consensus_features | 66 -consensus:features $param_consensus_features |
| 62 #end if | 67 #end if |
| 63 #if $param_consensus_sorting_method: | 68 #if $param_consensus_sorting_method: |
| 64 -consensus:sorting_method $param_consensus_sorting_method | 69 -consensus:sorting_method |
| 70 #if " " in str($param_consensus_sorting_method): | |
| 71 "$param_consensus_sorting_method" | |
| 72 #else | |
| 73 $param_consensus_sorting_method | |
| 74 #end if | |
| 65 #end if | 75 #end if |
| 66 #if $param_consensus_sort_by_maps: | 76 #if $param_consensus_sort_by_maps: |
| 67 -consensus:sort_by_maps | 77 -consensus:sort_by_maps |
| 68 #end if | 78 #end if |
| 69 #if $param_consensus_sort_by_size: | 79 #if $param_consensus_sort_by_size: |
| 74 -force | 84 -force |
| 75 #end if | 85 #end if |
| 76 #end if | 86 #end if |
| 77 </command> | 87 </command> |
| 78 <inputs> | 88 <inputs> |
| 79 <param name="param_in" type="data" format="featurexml,consensusxml,mzml,idxml" optional="False" label="Input file" help="(-in) "/> | 89 <param name="param_in" type="data" format="featurexml,consensusxml,idxml,mzml" optional="False" label="Input file" help="(-in) "/> |
| 80 <param name="param_separator" type="text" size="30" label="The used separator character(s); if not set the 'tab' character is used" help="(-separator) "> | 90 <param name="param_separator" type="text" size="30" label="The used separator character(s); if not set the 'tab' character is used" help="(-separator) "> |
| 81 <sanitizer> | 91 <sanitizer> |
| 82 <valid initial="string.printable"> | 92 <valid initial="string.printable"> |
| 83 <remove value="'"/> | 93 <remove value="'"/> |
| 84 <remove value="""/> | 94 <remove value="""/> |