diff TICCalculator.xml @ 7:488ea525e0b1 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/TICCalculator.xml	Tue Mar 20 14:49:52 2018 -0400
+++ b/TICCalculator.xml	Wed May 15 08:22:24 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>TICCalculator
+  <command detect_errors="aggressive"><![CDATA[TICCalculator
 
 #if $param_in:
   -in $param_in
@@ -37,7 +37,7 @@
 #end if
 #end if
 &gt; $param_stdout
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzData,mzxml,mzml,cachedMzML,dta,dta2d,mgf,featurexml,consensusxml,ms2,fid,tabular,peplist,kroenik,tabular" optional="False" label="Input file to convert" help="(-in) "/>
     <param name="param_read_method" type="select" optional="False" value="regular" label="Method to read the file" help="(-read_method) ">
@@ -62,5 +62,5 @@
   <help>Calculates the TIC from a mass spectrometric raw file (useful for benchmarking).
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_TICCalculator.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_TICCalculator.html</help>
 </tool>