diff TICCalculator.xml @ 0:cb4738f26b96 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author galaxyp
date Wed, 01 Mar 2017 12:51:22 -0500
parents
children 1373f6071423
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/TICCalculator.xml	Wed Mar 01 12:51:22 2017 -0500
@@ -0,0 +1,56 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--Proposed Tool Section: [Utilities]-->
+<tool id="TICCalculator" name="TICCalculator" version="2.1.0">
+  <description>Calculates the TIC from a mass spectrometric raw file (useful for benchmarking).</description>
+  <macros>
+    <token name="@EXECUTABLE@">TICCalculator</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="references"/>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>TICCalculator
+
+#if $param_in:
+  -in $param_in
+#end if
+#if $param_read_method:
+  -read_method $param_read_method
+#end if
+#if $param_loadData:
+  -loadData $param_loadData
+#end if
+#if $adv_opts.adv_opts_selector=='advanced':
+    #if $adv_opts.param_force:
+  -force
+#end if
+#end if
+&gt; $param_stdout
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="mgf,mzml,mzxml,tabular,featurexml,consensusxml" optional="False" label="Input file to convert" help="(-in) "/>
+    <param name="param_read_method" type="select" optional="False" value="regular" label="Method to read the file" help="(-read_method) ">
+      <option value="regular" selected="true">regular</option>
+      <option value="indexed">indexed</option>
+      <option value="indexed_parallel">indexed_parallel</option>
+      <option value="streaming">streaming</option>
+      <option value="cached">cached</option>
+      <option value="cached_parallel">cached_parallel</option>
+    </param>
+    <param name="param_loadData" display="radio" type="select" optional="False" value="true" label="Whether to actually load and decode the binary data (or whether to skip decoding the binary data)" help="(-loadData) ">
+      <option value="true" selected="true">true</option>
+      <option value="false">false</option>
+    </param>
+    <expand macro="advanced_options">
+      <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
+    </expand>
+  </inputs>
+  <outputs>
+    <data name="param_stdout" format="text" label="Output from stdout"/>
+  </outputs>
+  <help>Calculates the TIC from a mass spectrometric raw file (useful for benchmarking).
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/doxygen/parameters/output/UTILS_TICCalculator.html</help>
+</tool>