Mercurial > repos > galaxyp > openms_xfdr
annotate tool-data/pepnovo_models.loc.sample @ 5:e38e1a7af019 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f5fcdd54599554099fb00b1973cc91a766ad246a"
author | galaxyp |
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date | Wed, 23 Sep 2020 14:59:36 +0000 |
parents | 81402a5e4173 |
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rev | line source |
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81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
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1 # This is a sample file distributed with Galaxy that enables tools |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
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2 # to use pepnovo models |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
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changeset
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3 # The file has three tab separated columns: name, value, and path. |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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4 # The idea is that there are a number of models in a directory: |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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5 # - each model directory has a unique name (columns 2 and 0) |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
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changeset
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6 # - each model can contain a set of models (column 1) |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
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7 # |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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8 # The following example works fo the default models from |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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9 # http://proteomics.ucsd.edu/Software/PepNovo.html (just remove the comment |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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10 # chars and replace DIR_TO_PEPNOVO_MODELS) |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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11 |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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12 #default_models CID_IT_TRYP DIR_TO_PEPNOVO_MODELS |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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13 #default_models LTQ_COMP DIR_TO_PEPNOVO_MODELS |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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14 #default_models DBC4_PEAK DIR_TO_PEPNOVO_MODELS |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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15 #default_models CID_IT_TRYP_TAG5 DIR_TO_PEPNOVO_MODELS |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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16 #default_models CID_IT_TRYP_TAG6 DIR_TO_PEPNOVO_MODELS |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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17 #default_models ITDNV_PEAK DIR_TO_PEPNOVO_MODELS |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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18 #default_models CID_IT_TRYP_SCORE DIR_TO_PEPNOVO_MODELS |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
|
19 #default_models CID_IT_TRYP_TAG3 DIR_TO_PEPNOVO_MODELS |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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20 #default_models CID_IT_TRYP_DNVPART DIR_TO_PEPNOVO_MODELS |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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21 #default_models CID_IT_TRYP_TAG4 DIR_TO_PEPNOVO_MODELS |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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22 #default_models CID_IT_TRYP_DB DIR_TO_PEPNOVO_MODELS |
81402a5e4173
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit ddf41e8bda1ba065f5cdec98e93dee8165ffc1b9"
galaxyp
parents:
diff
changeset
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23 #default_models CID_IT_TRYP_CSP DIR_TO_PEPNOVO_MODELS |