diff XFDR.xml @ 2:7c6217c5b13f draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5

--- a/XFDR.xml	Tue Mar 20 14:53:40 2018 -0400
+++ b/XFDR.xml	Wed May 15 08:27:06 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>XFDR
+  <command detect_errors="aggressive"><![CDATA[XFDR
 
 #if $param_in:
   -in $param_in
@@ -47,7 +47,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="xml,idxml,mzid" optional="True" label="Crosslink Identifications in either xquest.xml, idXML, or mzIdentML format (as produced by OpenPepXL)" help="(-in) "/>
     <param name="param_minborder" type="integer" value="-1" label="Filter for minimum precursor mass error (ppm)" help="(-minborder) Can only be applied for xquest.xml input"/>
@@ -68,5 +68,5 @@
   <help>Calculates false discovery rate estimates on crosslink identifications
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_XFDR.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_XFDR.html</help>
 </tool>