Mercurial > repos > galaxyp > openms_xtandemadapter
comparison XTandemAdapter.xml @ 4:7b5457bd6112 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 2d404b98b40ff043be71bea81c114ea3433c0751
| author | galaxyp |
|---|---|
| date | Thu, 09 Nov 2017 06:12:04 -0500 |
| parents | 22e9bb7d151a |
| children | c8b225c69a7f |
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| 3:61bc5fb43781 | 4:7b5457bd6112 |
|---|---|
| 1 <?xml version='1.0' encoding='UTF-8'?> | 1 <?xml version='1.0' encoding='UTF-8'?> |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> |
| 3 <!--Proposed Tool Section: [Identification]--> | 3 <!--Proposed Tool Section: [Identification]--> |
| 4 <tool id="XTandemAdapter" name="XTandemAdapter" version="2.2.0"> | 4 <tool id="XTandemAdapter" name="XTandemAdapter" version="2.2.0.1"> |
| 5 <description>Annotates MS/MS spectra using X! Tandem.</description> | 5 <description>Annotates MS/MS spectra using X! Tandem.</description> |
| 6 <macros> | 6 <macros> |
| 7 <token name="@EXECUTABLE@">XTandemAdapter</token> | 7 <token name="@EXECUTABLE@">XTandemAdapter</token> |
| 8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
| 9 </macros> | 9 </macros> |
| 2663 <option value="sulfo+amino (Y)">sulfo+amino (Y)</option> | 2663 <option value="sulfo+amino (Y)">sulfo+amino (Y)</option> |
| 2664 <option value="thioacylPA (K)">thioacylPA (K)</option> | 2664 <option value="thioacylPA (K)">thioacylPA (K)</option> |
| 2665 <option value="trifluoro (L)">trifluoro (L)</option> | 2665 <option value="trifluoro (L)">trifluoro (L)</option> |
| 2666 </param> | 2666 </param> |
| 2667 </repeat> | 2667 </repeat> |
| 2668 <repeat name="rep_param_variable_modifications" min="0" max="1" title="param_variable_modifications"> | 2668 <repeat name="rep_param_variable_modifications" min="0" title="param_variable_modifications"> |
| 2669 <param name="param_variable_modifications" type="select" optional="True" label="Variable modifications, specified using Unimod (www.unimod.org) terms," help="(-variable_modifications) e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'"> | 2669 <param name="param_variable_modifications" type="select" optional="True" label="Variable modifications, specified using Unimod (www.unimod.org) terms," help="(-variable_modifications) e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'"> |
| 2670 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option> | 2670 <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option> |
| 2671 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option> | 2671 <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option> |
| 2672 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option> | 2672 <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option> |
| 2673 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option> | 2673 <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option> |