Mercurial > repos > galaxyp > openms_xtandemadapter
changeset 1:cd0746ee4796 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
| author | galaxyp |
|---|---|
| date | Wed, 09 Aug 2017 09:18:43 -0400 |
| parents | f9bc00c0ebed |
| children | 22e9bb7d151a |
| files | XTandemAdapter.xml datatypes_conf.xml filetypes.txt macros.xml readme.md tool.conf |
| diffstat | 6 files changed, 2015 insertions(+), 146 deletions(-) [+] |
line wrap: on
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--- a/XTandemAdapter.xml Wed Mar 01 12:31:29 2017 -0500 +++ b/XTandemAdapter.xml Wed Aug 09 09:18:43 2017 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Identification]--> -<tool id="XTandemAdapter" name="XTandemAdapter" version="2.1.0"> +<tool id="XTandemAdapter" name="XTandemAdapter" version="2.2.0"> <description>Annotates MS/MS spectra using X! Tandem.</description> <macros> <token name="@EXECUTABLE@">XTandemAdapter</token> @@ -19,6 +19,9 @@ #if $param_out: -out $param_out #end if +#if $param_xml_out: + -xml_out $param_xml_out +#end if #if $param_database: -database $param_database #end if @@ -35,19 +38,26 @@ -fragment_mass_tolerance $param_fragment_mass_tolerance #end if #if $param_precursor_error_units: - -precursor_error_units $param_precursor_error_units + -precursor_error_units + #if " " in str($param_precursor_error_units): + "$param_precursor_error_units" + #else + $param_precursor_error_units + #end if #end if #if $param_fragment_error_units: - -fragment_error_units $param_fragment_error_units -#end if -#if $param_min_precursor_charge: - -min_precursor_charge $param_min_precursor_charge + -fragment_error_units + #if " " in str($param_fragment_error_units): + "$param_fragment_error_units" + #else + $param_fragment_error_units + #end if #end if #if $param_max_precursor_charge: -max_precursor_charge $param_max_precursor_charge #end if -#if $param_allow_isotope_error: - -allow_isotope_error $param_allow_isotope_error +#if $param_no_isotope_error: + -no_isotope_error #end if #if $rep_param_fixed_modifications: @@ -71,30 +81,34 @@ #end if #end for #end if -#if $param_missed_cleavages: - -missed_cleavages $param_missed_cleavages -#end if #if $param_minimum_fragment_mz: -minimum_fragment_mz $param_minimum_fragment_mz #end if -#if $param_cleavage_site: - -cleavage_site $param_cleavage_site +#if $param_enzyme: + -enzyme + #if " " in str($param_enzyme): + "$param_enzyme" + #else + $param_enzyme + #end if +#end if +#if $param_missed_cleavages: + -missed_cleavages $param_missed_cleavages +#end if +#if $param_semi_cleavage: + -semi_cleavage #end if #if $param_output_results: - -output_results $param_output_results + -output_results + #if " " in str($param_output_results): + "$param_output_results" + #else + $param_output_results + #end if #end if #if $param_max_valid_expect: -max_valid_expect $param_max_valid_expect #end if -#if $param_refinement: - -refinement -#end if -#if $param_use_noise_suppression: - -use_noise_suppression -#end if -#if $param_semi_cleavage: - -semi_cleavage -#end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force @@ -102,10 +116,10 @@ #end if </command> <inputs> - <param name="param_in" type="data" format="mzml" optional="False" label="Input file" help="(-in) "/> + <param name="param_in" type="data" format="mzml" optional="False" label="Input file containing MS2 spectra" help="(-in) "/> <param name="param_database" type="data" format="fasta" optional="False" label="FASTA file or pro file" help="(-database) Non-existing relative file-names are looked up via'OpenMS.ini:id_db_dir'"/> - <param name="param_default_config_file" type="data" format="" optional="True" value="CHEMISTRY/XTandem_default_input.xml" label="Default parameters input file, defaulting to the ones in the OpenMS/share folder.All parameters of this adapter take precedence over this file! Use it for parameters not available here!" help="(-default_config_file) "/> - <param name="param_ignore_adapter_param" display="radio" type="boolean" truevalue="-ignore_adapter_param" falsevalue="" checked="false" optional="True" label="The config given in 'default_config_file' is used exclusively! No matter what other parameters (apart from -in,-out,-database,-xtandem_executable) are saying" help="(-ignore_adapter_param) "/> + <param name="param_default_config_file" type="data" format="xml" optional="True" label="Default X! Tandem configuration file" help="(-default_config_file) All parameters of this adapter take precedence over the file - use it for parameters not available here. A template file can be found at 'OpenMS/share/CHEMISTRY/XTandem_default_input.xml'"/> + <param name="param_ignore_adapter_param" display="radio" type="boolean" truevalue="-ignore_adapter_param" falsevalue="" checked="false" optional="True" label="Set this to use the configuration given in 'default_config_file' exclusively, ignoring other parameters (apart from 'in', 'out', 'database', 'xtandem_executable') set via this adapte" help="(-ignore_adapter_param) "/> <param name="param_precursor_mass_tolerance" type="float" value="10.0" label="Precursor mass tolerance" help="(-precursor_mass_tolerance) "/> <param name="param_fragment_mass_tolerance" type="float" value="0.3" label="Fragment mass erro" help="(-fragment_mass_tolerance) "/> <param name="param_precursor_error_units" display="radio" type="select" optional="False" value="ppm" label="Parent monoisotopic mass error units" help="(-precursor_error_units) "> @@ -116,14 +130,11 @@ <option value="ppm">ppm</option> <option value="Da" selected="true">Da</option> </param> - <param name="param_min_precursor_charge" type="integer" value="2" label="Minimum precursor charge" help="(-min_precursor_charge) "/> - <param name="param_max_precursor_charge" type="integer" value="4" label="Maximum precursor charge" help="(-max_precursor_charge) "/> - <param name="param_allow_isotope_error" display="radio" type="select" optional="False" value="yes" label="If set, misassignment to the first and second isotopic 13C peak are also considered" help="(-allow_isotope_error) "> - <option value="yes" selected="true">yes</option> - <option value="no">no</option> - </param> + <param name="param_max_precursor_charge" type="integer" min="0" optional="True" value="4" label="Maximum precursor charge ('0' to use X! Tandem default)" help="(-max_precursor_charge) "/> + <param name="param_no_isotope_error" display="radio" type="boolean" truevalue="-no_isotope_error" falsevalue="" checked="false" optional="True" label="By default, misassignment to the first and second isotopic 13C peak are also considered" help="(-no_isotope_error) Set this flag to disable"/> <repeat name="rep_param_fixed_modifications" min="0" max="1" title="param_fixed_modifications"> - <param name="param_fixed_modifications" type="select" optional="True" label="Fixed modifications, specified using UniMod (www.unimod.org) terms," help="(-fixed_modifications) e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'"> + <param name="param_fixed_modifications" type="select" optional="True" label="Fixed modifications, specified using Unimod (www.unimod.org) terms," help="(-fixed_modifications) e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'"> + <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option> <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option> <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option> <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option> @@ -146,6 +157,7 @@ <option value="ADP-Ribosyl (N)">ADP-Ribosyl (N)</option> <option value="ADP-Ribosyl (R)">ADP-Ribosyl (R)</option> <option value="ADP-Ribosyl (S)">ADP-Ribosyl (S)</option> + <option value="ADP-Ribosyl (T)">ADP-Ribosyl (T)</option> <option value="AEBS (H)">AEBS (H)</option> <option value="AEBS (K)">AEBS (K)</option> <option value="AEBS (S)">AEBS (S)</option> @@ -277,7 +289,6 @@ <option value="BDMAPP (K)">BDMAPP (K)</option> <option value="BDMAPP (W)">BDMAPP (W)</option> <option value="BDMAPP (Y)">BDMAPP (Y)</option> - <option value="BHAc (K)">BHAc (K)</option> <option value="BHT (C)">BHT (C)</option> <option value="BHT (H)">BHT (H)</option> <option value="BHT (K)">BHT (K)</option> @@ -302,23 +313,28 @@ <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option> <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option> <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option> + <option value="Biotin-tyramide (Y)">Biotin-tyramide (Y)</option> <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option> <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option> <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option> <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option> <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option> + <option value="Biotin:Thermo-21330 (K)">Biotin:Thermo-21330 (K)</option> + <option value="Biotin:Thermo-21330 (N-term)">Biotin:Thermo-21330 (N-term)</option> <option value="Biotin:Thermo-21345 (Q)">Biotin:Thermo-21345 (Q)</option> - <option value="Biotin:Thermo-21360 (C-term)">Biotin:Thermo-21360 (C-term)</option> + <option value="Biotin:Thermo-21360 (X)">Biotin:Thermo-21360 (X)</option> <option value="Biotin:Thermo-21901+2H2O (C)">Biotin:Thermo-21901+2H2O (C)</option> <option value="Biotin:Thermo-21901+H2O (C)">Biotin:Thermo-21901+H2O (C)</option> <option value="Biotin:Thermo-21911 (C)">Biotin:Thermo-21911 (C)</option> - <option value="Biotin:Thermo-33033 (N-term)">Biotin:Thermo-33033 (N-term)</option> - <option value="Biotin:Thermo-33033-H (N-term)">Biotin:Thermo-33033-H (N-term)</option> + <option value="Biotin:Thermo-33033 (X)">Biotin:Thermo-33033 (X)</option> + <option value="Biotin:Thermo-33033-H (X)">Biotin:Thermo-33033-H (X)</option> <option value="Biotin:Thermo-88310 (K)">Biotin:Thermo-88310 (K)</option> <option value="Biotin:Thermo-88317 (S)">Biotin:Thermo-88317 (S)</option> <option value="Biotin:Thermo-88317 (Y)">Biotin:Thermo-88317 (Y)</option> <option value="BisANS (K)">BisANS (K)</option> <option value="Bodipy (C)">Bodipy (C)</option> + <option value="Brij35 (N-term)">Brij35 (N-term)</option> + <option value="Brij58 (N-term)">Brij58 (N-term)</option> <option value="Bromo (F)">Bromo (F)</option> <option value="Bromo (H)">Bromo (H)</option> <option value="Bromo (W)">Bromo (W)</option> @@ -339,6 +355,226 @@ <option value="CLIP_TRAQ_4 (K)">CLIP_TRAQ_4 (K)</option> <option value="CLIP_TRAQ_4 (N-term)">CLIP_TRAQ_4 (N-term)</option> <option value="CLIP_TRAQ_4 (Y)">CLIP_TRAQ_4 (Y)</option> + <option value="CUSTOM0 (A)">CUSTOM0 (A)</option> + <option value="CUSTOM0 (C)">CUSTOM0 (C)</option> + <option value="CUSTOM0 (C-term)">CUSTOM0 (C-term)</option> + <option value="CUSTOM0 (D)">CUSTOM0 (D)</option> + <option value="CUSTOM0 (E)">CUSTOM0 (E)</option> + <option value="CUSTOM0 (F)">CUSTOM0 (F)</option> + <option value="CUSTOM0 (G)">CUSTOM0 (G)</option> + <option value="CUSTOM0 (H)">CUSTOM0 (H)</option> + <option value="CUSTOM0 (I)">CUSTOM0 (I)</option> + <option value="CUSTOM0 (K)">CUSTOM0 (K)</option> + <option value="CUSTOM0 (L)">CUSTOM0 (L)</option> + <option value="CUSTOM0 (M)">CUSTOM0 (M)</option> + <option value="CUSTOM0 (N)">CUSTOM0 (N)</option> + <option value="CUSTOM0 (N-term)">CUSTOM0 (N-term)</option> + <option value="CUSTOM0 (P)">CUSTOM0 (P)</option> + <option value="CUSTOM0 (Q)">CUSTOM0 (Q)</option> + <option value="CUSTOM0 (R)">CUSTOM0 (R)</option> + <option value="CUSTOM0 (S)">CUSTOM0 (S)</option> + <option value="CUSTOM0 (T)">CUSTOM0 (T)</option> + <option value="CUSTOM0 (V)">CUSTOM0 (V)</option> + <option value="CUSTOM0 (W)">CUSTOM0 (W)</option> + <option value="CUSTOM0 (Y)">CUSTOM0 (Y)</option> + <option value="CUSTOM1 (A)">CUSTOM1 (A)</option> + <option value="CUSTOM1 (C)">CUSTOM1 (C)</option> + <option value="CUSTOM1 (C-term)">CUSTOM1 (C-term)</option> + <option value="CUSTOM1 (D)">CUSTOM1 (D)</option> + <option value="CUSTOM1 (E)">CUSTOM1 (E)</option> + <option value="CUSTOM1 (F)">CUSTOM1 (F)</option> + <option value="CUSTOM1 (G)">CUSTOM1 (G)</option> + <option value="CUSTOM1 (H)">CUSTOM1 (H)</option> + <option value="CUSTOM1 (I)">CUSTOM1 (I)</option> + <option value="CUSTOM1 (K)">CUSTOM1 (K)</option> + <option value="CUSTOM1 (L)">CUSTOM1 (L)</option> + <option value="CUSTOM1 (M)">CUSTOM1 (M)</option> + <option value="CUSTOM1 (N)">CUSTOM1 (N)</option> + <option value="CUSTOM1 (N-term)">CUSTOM1 (N-term)</option> + <option value="CUSTOM1 (P)">CUSTOM1 (P)</option> + <option value="CUSTOM1 (Q)">CUSTOM1 (Q)</option> + <option value="CUSTOM1 (R)">CUSTOM1 (R)</option> + <option value="CUSTOM1 (S)">CUSTOM1 (S)</option> + <option value="CUSTOM1 (T)">CUSTOM1 (T)</option> + <option value="CUSTOM1 (V)">CUSTOM1 (V)</option> + <option value="CUSTOM1 (W)">CUSTOM1 (W)</option> + <option value="CUSTOM1 (Y)">CUSTOM1 (Y)</option> + <option value="CUSTOM2 (A)">CUSTOM2 (A)</option> + <option value="CUSTOM2 (C)">CUSTOM2 (C)</option> + <option value="CUSTOM2 (C-term)">CUSTOM2 (C-term)</option> + <option value="CUSTOM2 (D)">CUSTOM2 (D)</option> + <option value="CUSTOM2 (E)">CUSTOM2 (E)</option> + <option value="CUSTOM2 (F)">CUSTOM2 (F)</option> + <option value="CUSTOM2 (G)">CUSTOM2 (G)</option> + <option value="CUSTOM2 (H)">CUSTOM2 (H)</option> + <option value="CUSTOM2 (I)">CUSTOM2 (I)</option> + <option value="CUSTOM2 (K)">CUSTOM2 (K)</option> + <option value="CUSTOM2 (L)">CUSTOM2 (L)</option> + <option value="CUSTOM2 (M)">CUSTOM2 (M)</option> + <option value="CUSTOM2 (N)">CUSTOM2 (N)</option> + <option value="CUSTOM2 (N-term)">CUSTOM2 (N-term)</option> + <option value="CUSTOM2 (P)">CUSTOM2 (P)</option> + <option value="CUSTOM2 (Q)">CUSTOM2 (Q)</option> + <option value="CUSTOM2 (R)">CUSTOM2 (R)</option> + <option value="CUSTOM2 (S)">CUSTOM2 (S)</option> + <option value="CUSTOM2 (T)">CUSTOM2 (T)</option> + <option value="CUSTOM2 (V)">CUSTOM2 (V)</option> + <option value="CUSTOM2 (W)">CUSTOM2 (W)</option> + <option value="CUSTOM2 (Y)">CUSTOM2 (Y)</option> + <option value="CUSTOM3 (A)">CUSTOM3 (A)</option> + <option value="CUSTOM3 (C)">CUSTOM3 (C)</option> + <option value="CUSTOM3 (C-term)">CUSTOM3 (C-term)</option> + <option value="CUSTOM3 (D)">CUSTOM3 (D)</option> + <option value="CUSTOM3 (E)">CUSTOM3 (E)</option> + <option value="CUSTOM3 (F)">CUSTOM3 (F)</option> + <option value="CUSTOM3 (G)">CUSTOM3 (G)</option> + <option value="CUSTOM3 (H)">CUSTOM3 (H)</option> + <option value="CUSTOM3 (I)">CUSTOM3 (I)</option> + <option value="CUSTOM3 (K)">CUSTOM3 (K)</option> + <option value="CUSTOM3 (L)">CUSTOM3 (L)</option> + <option value="CUSTOM3 (M)">CUSTOM3 (M)</option> + <option value="CUSTOM3 (N)">CUSTOM3 (N)</option> + <option value="CUSTOM3 (N-term)">CUSTOM3 (N-term)</option> + <option value="CUSTOM3 (P)">CUSTOM3 (P)</option> + <option value="CUSTOM3 (Q)">CUSTOM3 (Q)</option> + <option value="CUSTOM3 (R)">CUSTOM3 (R)</option> + <option value="CUSTOM3 (S)">CUSTOM3 (S)</option> + <option value="CUSTOM3 (T)">CUSTOM3 (T)</option> + <option value="CUSTOM3 (V)">CUSTOM3 (V)</option> + <option value="CUSTOM3 (W)">CUSTOM3 (W)</option> + <option value="CUSTOM3 (Y)">CUSTOM3 (Y)</option> + <option value="CUSTOM4 (A)">CUSTOM4 (A)</option> + <option value="CUSTOM4 (C)">CUSTOM4 (C)</option> + <option value="CUSTOM4 (C-term)">CUSTOM4 (C-term)</option> + <option value="CUSTOM4 (D)">CUSTOM4 (D)</option> + <option value="CUSTOM4 (E)">CUSTOM4 (E)</option> + <option value="CUSTOM4 (F)">CUSTOM4 (F)</option> + <option value="CUSTOM4 (G)">CUSTOM4 (G)</option> + <option value="CUSTOM4 (H)">CUSTOM4 (H)</option> + <option value="CUSTOM4 (I)">CUSTOM4 (I)</option> + <option value="CUSTOM4 (K)">CUSTOM4 (K)</option> + <option value="CUSTOM4 (L)">CUSTOM4 (L)</option> + <option value="CUSTOM4 (M)">CUSTOM4 (M)</option> + <option value="CUSTOM4 (N)">CUSTOM4 (N)</option> + <option value="CUSTOM4 (N-term)">CUSTOM4 (N-term)</option> + <option value="CUSTOM4 (P)">CUSTOM4 (P)</option> + <option value="CUSTOM4 (Q)">CUSTOM4 (Q)</option> + <option value="CUSTOM4 (R)">CUSTOM4 (R)</option> + <option value="CUSTOM4 (S)">CUSTOM4 (S)</option> + <option value="CUSTOM4 (T)">CUSTOM4 (T)</option> + <option value="CUSTOM4 (V)">CUSTOM4 (V)</option> + <option value="CUSTOM4 (W)">CUSTOM4 (W)</option> + <option value="CUSTOM4 (Y)">CUSTOM4 (Y)</option> + <option value="CUSTOM5 (A)">CUSTOM5 (A)</option> + <option value="CUSTOM5 (C)">CUSTOM5 (C)</option> + <option value="CUSTOM5 (C-term)">CUSTOM5 (C-term)</option> + <option value="CUSTOM5 (D)">CUSTOM5 (D)</option> + <option value="CUSTOM5 (E)">CUSTOM5 (E)</option> + <option value="CUSTOM5 (F)">CUSTOM5 (F)</option> + <option value="CUSTOM5 (G)">CUSTOM5 (G)</option> + <option value="CUSTOM5 (H)">CUSTOM5 (H)</option> + <option value="CUSTOM5 (I)">CUSTOM5 (I)</option> + <option value="CUSTOM5 (K)">CUSTOM5 (K)</option> + <option value="CUSTOM5 (L)">CUSTOM5 (L)</option> + <option value="CUSTOM5 (M)">CUSTOM5 (M)</option> + <option value="CUSTOM5 (N)">CUSTOM5 (N)</option> + <option value="CUSTOM5 (N-term)">CUSTOM5 (N-term)</option> + <option value="CUSTOM5 (P)">CUSTOM5 (P)</option> + <option value="CUSTOM5 (Q)">CUSTOM5 (Q)</option> + <option value="CUSTOM5 (R)">CUSTOM5 (R)</option> + <option value="CUSTOM5 (S)">CUSTOM5 (S)</option> + <option value="CUSTOM5 (T)">CUSTOM5 (T)</option> + <option value="CUSTOM5 (V)">CUSTOM5 (V)</option> + <option value="CUSTOM5 (W)">CUSTOM5 (W)</option> + <option value="CUSTOM5 (Y)">CUSTOM5 (Y)</option> + <option value="CUSTOM6 (A)">CUSTOM6 (A)</option> + <option value="CUSTOM6 (C)">CUSTOM6 (C)</option> + <option value="CUSTOM6 (C-term)">CUSTOM6 (C-term)</option> + <option value="CUSTOM6 (D)">CUSTOM6 (D)</option> + <option value="CUSTOM6 (E)">CUSTOM6 (E)</option> + <option value="CUSTOM6 (F)">CUSTOM6 (F)</option> + <option value="CUSTOM6 (G)">CUSTOM6 (G)</option> + <option value="CUSTOM6 (H)">CUSTOM6 (H)</option> + <option value="CUSTOM6 (I)">CUSTOM6 (I)</option> + <option value="CUSTOM6 (K)">CUSTOM6 (K)</option> + <option value="CUSTOM6 (L)">CUSTOM6 (L)</option> + <option value="CUSTOM6 (M)">CUSTOM6 (M)</option> + <option value="CUSTOM6 (N)">CUSTOM6 (N)</option> + <option value="CUSTOM6 (N-term)">CUSTOM6 (N-term)</option> + <option value="CUSTOM6 (P)">CUSTOM6 (P)</option> + <option value="CUSTOM6 (Q)">CUSTOM6 (Q)</option> + <option value="CUSTOM6 (R)">CUSTOM6 (R)</option> + <option value="CUSTOM6 (S)">CUSTOM6 (S)</option> + <option value="CUSTOM6 (T)">CUSTOM6 (T)</option> + <option value="CUSTOM6 (V)">CUSTOM6 (V)</option> + <option value="CUSTOM6 (W)">CUSTOM6 (W)</option> + <option value="CUSTOM6 (Y)">CUSTOM6 (Y)</option> + <option value="CUSTOM7 (A)">CUSTOM7 (A)</option> + <option value="CUSTOM7 (C)">CUSTOM7 (C)</option> + <option value="CUSTOM7 (C-term)">CUSTOM7 (C-term)</option> + <option value="CUSTOM7 (D)">CUSTOM7 (D)</option> + <option value="CUSTOM7 (E)">CUSTOM7 (E)</option> + <option value="CUSTOM7 (F)">CUSTOM7 (F)</option> + <option value="CUSTOM7 (G)">CUSTOM7 (G)</option> + <option value="CUSTOM7 (H)">CUSTOM7 (H)</option> + <option value="CUSTOM7 (I)">CUSTOM7 (I)</option> + <option value="CUSTOM7 (K)">CUSTOM7 (K)</option> + <option value="CUSTOM7 (L)">CUSTOM7 (L)</option> + <option value="CUSTOM7 (M)">CUSTOM7 (M)</option> + <option value="CUSTOM7 (N)">CUSTOM7 (N)</option> + <option value="CUSTOM7 (N-term)">CUSTOM7 (N-term)</option> + <option value="CUSTOM7 (P)">CUSTOM7 (P)</option> + <option value="CUSTOM7 (Q)">CUSTOM7 (Q)</option> + <option value="CUSTOM7 (R)">CUSTOM7 (R)</option> + <option value="CUSTOM7 (S)">CUSTOM7 (S)</option> + <option value="CUSTOM7 (T)">CUSTOM7 (T)</option> + <option value="CUSTOM7 (V)">CUSTOM7 (V)</option> + <option value="CUSTOM7 (W)">CUSTOM7 (W)</option> + <option value="CUSTOM7 (Y)">CUSTOM7 (Y)</option> + <option value="CUSTOM8 (A)">CUSTOM8 (A)</option> + <option value="CUSTOM8 (C)">CUSTOM8 (C)</option> + <option value="CUSTOM8 (C-term)">CUSTOM8 (C-term)</option> + <option value="CUSTOM8 (D)">CUSTOM8 (D)</option> + <option value="CUSTOM8 (E)">CUSTOM8 (E)</option> + <option value="CUSTOM8 (F)">CUSTOM8 (F)</option> + <option value="CUSTOM8 (G)">CUSTOM8 (G)</option> + <option value="CUSTOM8 (H)">CUSTOM8 (H)</option> + <option value="CUSTOM8 (I)">CUSTOM8 (I)</option> + <option value="CUSTOM8 (K)">CUSTOM8 (K)</option> + <option value="CUSTOM8 (L)">CUSTOM8 (L)</option> + <option value="CUSTOM8 (M)">CUSTOM8 (M)</option> + <option value="CUSTOM8 (N)">CUSTOM8 (N)</option> + <option value="CUSTOM8 (N-term)">CUSTOM8 (N-term)</option> + <option value="CUSTOM8 (P)">CUSTOM8 (P)</option> + <option value="CUSTOM8 (Q)">CUSTOM8 (Q)</option> + <option value="CUSTOM8 (R)">CUSTOM8 (R)</option> + <option value="CUSTOM8 (S)">CUSTOM8 (S)</option> + <option value="CUSTOM8 (T)">CUSTOM8 (T)</option> + <option value="CUSTOM8 (V)">CUSTOM8 (V)</option> + <option value="CUSTOM8 (W)">CUSTOM8 (W)</option> + <option value="CUSTOM8 (Y)">CUSTOM8 (Y)</option> + <option value="CUSTOM9 (A)">CUSTOM9 (A)</option> + <option value="CUSTOM9 (C)">CUSTOM9 (C)</option> + <option value="CUSTOM9 (C-term)">CUSTOM9 (C-term)</option> + <option value="CUSTOM9 (D)">CUSTOM9 (D)</option> + <option value="CUSTOM9 (E)">CUSTOM9 (E)</option> + <option value="CUSTOM9 (F)">CUSTOM9 (F)</option> + <option value="CUSTOM9 (G)">CUSTOM9 (G)</option> + <option value="CUSTOM9 (H)">CUSTOM9 (H)</option> + <option value="CUSTOM9 (I)">CUSTOM9 (I)</option> + <option value="CUSTOM9 (K)">CUSTOM9 (K)</option> + <option value="CUSTOM9 (L)">CUSTOM9 (L)</option> + <option value="CUSTOM9 (M)">CUSTOM9 (M)</option> + <option value="CUSTOM9 (N)">CUSTOM9 (N)</option> + <option value="CUSTOM9 (N-term)">CUSTOM9 (N-term)</option> + <option value="CUSTOM9 (P)">CUSTOM9 (P)</option> + <option value="CUSTOM9 (Q)">CUSTOM9 (Q)</option> + <option value="CUSTOM9 (R)">CUSTOM9 (R)</option> + <option value="CUSTOM9 (S)">CUSTOM9 (S)</option> + <option value="CUSTOM9 (T)">CUSTOM9 (T)</option> + <option value="CUSTOM9 (V)">CUSTOM9 (V)</option> + <option value="CUSTOM9 (W)">CUSTOM9 (W)</option> + <option value="CUSTOM9 (Y)">CUSTOM9 (Y)</option> <option value="Can-FP-biotin (S)">Can-FP-biotin (S)</option> <option value="Can-FP-biotin (T)">Can-FP-biotin (T)</option> <option value="Can-FP-biotin (Y)">Can-FP-biotin (Y)</option> @@ -350,6 +586,7 @@ <option value="Carbamidomethyl (N-term)">Carbamidomethyl (N-term)</option> <option value="Carbamidomethyl (S)">Carbamidomethyl (S)</option> <option value="Carbamidomethyl (T)">Carbamidomethyl (T)</option> + <option value="Carbamidomethyl (U)">Carbamidomethyl (U)</option> <option value="Carbamidomethyl (Y)">Carbamidomethyl (Y)</option> <option value="CarbamidomethylDTT (C)">CarbamidomethylDTT (C)</option> <option value="Carbamyl (C)">Carbamyl (C)</option> @@ -367,9 +604,11 @@ <option value="Carboxy (W)">Carboxy (W)</option> <option value="Carboxyethyl (H)">Carboxyethyl (H)</option> <option value="Carboxyethyl (K)">Carboxyethyl (K)</option> + <option value="Carboxyethylpyrrole (K)">Carboxyethylpyrrole (K)</option> <option value="Carboxymethyl (C)">Carboxymethyl (C)</option> <option value="Carboxymethyl (K)">Carboxymethyl (K)</option> <option value="Carboxymethyl (N-term)">Carboxymethyl (N-term)</option> + <option value="Carboxymethyl (U)">Carboxymethyl (U)</option> <option value="Carboxymethyl (W)">Carboxymethyl (W)</option> <option value="Carboxymethyl:13C(2) (C)">Carboxymethyl:13C(2) (C)</option> <option value="CarboxymethylDMAP (N-term)">CarboxymethylDMAP (N-term)</option> @@ -383,6 +622,7 @@ <option value="Cation:Cu[I] (C-term)">Cation:Cu[I] (C-term)</option> <option value="Cation:Cu[I] (D)">Cation:Cu[I] (D)</option> <option value="Cation:Cu[I] (E)">Cation:Cu[I] (E)</option> + <option value="Cation:Cu[I] (H)">Cation:Cu[I] (H)</option> <option value="Cation:Fe[II] (C-term)">Cation:Fe[II] (C-term)</option> <option value="Cation:Fe[II] (D)">Cation:Fe[II] (D)</option> <option value="Cation:Fe[II] (E)">Cation:Fe[II] (E)</option> @@ -404,6 +644,7 @@ <option value="Cation:Zn[II] (C-term)">Cation:Zn[II] (C-term)</option> <option value="Cation:Zn[II] (D)">Cation:Zn[II] (D)</option> <option value="Cation:Zn[II] (E)">Cation:Zn[II] (E)</option> + <option value="Cation:Zn[II] (H)">Cation:Zn[II] (H)</option> <option value="Chlorination (Y)">Chlorination (Y)</option> <option value="Chlorpyrifos (S)">Chlorpyrifos (S)</option> <option value="Chlorpyrifos (T)">Chlorpyrifos (T)</option> @@ -435,6 +676,7 @@ <option value="Cys->Arg (C)">Cys->Arg (C)</option> <option value="Cys->Asn (C)">Cys->Asn (C)</option> <option value="Cys->Asp (C)">Cys->Asp (C)</option> + <option value="Cys->CamSec (C)">Cys->CamSec (C)</option> <option value="Cys->Dha (C)">Cys->Dha (C)</option> <option value="Cys->Gln (C)">Cys->Gln (C)</option> <option value="Cys->Glu (C)">Cys->Glu (C)</option> @@ -445,6 +687,8 @@ <option value="Cys->Oxoalanine (C)">Cys->Oxoalanine (C)</option> <option value="Cys->Phe (C)">Cys->Phe (C)</option> <option value="Cys->Pro (C)">Cys->Pro (C)</option> + <option value="Cys->SecNEM (C)">Cys->SecNEM (C)</option> + <option value="Cys->SecNEM:2H(5) (C)">Cys->SecNEM:2H(5) (C)</option> <option value="Cys->Ser (C)">Cys->Ser (C)</option> <option value="Cys->Thr (C)">Cys->Thr (C)</option> <option value="Cys->Trp (C)">Cys->Trp (C)</option> @@ -537,7 +781,7 @@ <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option> <option value="Delta:H(6)C(3)O(1) (K)">Delta:H(6)C(3)O(1) (K)</option> <option value="Delta:H(6)C(6)O(1) (K)">Delta:H(6)C(6)O(1) (K)</option> - <option value="Delta:H(8)C(6)O(1) (L)">Delta:H(8)C(6)O(1) (L)</option> + <option value="Delta:H(8)C(6)O(1) (K)">Delta:H(8)C(6)O(1) (K)</option> <option value="Delta:H(8)C(6)O(2) (K)">Delta:H(8)C(6)O(2) (K)</option> <option value="Delta:Hg(1) (C)">Delta:Hg(1) (C)</option> <option value="Delta:S(-1)Se(1) (C)">Delta:S(-1)Se(1) (C)</option> @@ -547,6 +791,7 @@ <option value="Deoxy (S)">Deoxy (S)</option> <option value="Deoxy (T)">Deoxy (T)</option> <option value="Deoxyhypusine (K)">Deoxyhypusine (K)</option> + <option value="Deoxyhypusine (Q)">Deoxyhypusine (Q)</option> <option value="Dethiomethyl (M)">Dethiomethyl (M)</option> <option value="DiART6plex (K)">DiART6plex (K)</option> <option value="DiART6plex (N-term)">DiART6plex (N-term)</option> @@ -610,10 +855,16 @@ <option value="Dimethyl (N)">Dimethyl (N)</option> <option value="Dimethyl (N-term)">Dimethyl (N-term)</option> <option value="Dimethyl (R)">Dimethyl (R)</option> + <option value="Dimethyl:2H(2)13C (K)">Dimethyl:2H(2)13C (K)</option> + <option value="Dimethyl:2H(2)13C (N)">Dimethyl:2H(2)13C (N)</option> + <option value="Dimethyl:2H(2)13C (N-term)">Dimethyl:2H(2)13C (N-term)</option> + <option value="Dimethyl:2H(2)13C (R)">Dimethyl:2H(2)13C (R)</option> <option value="Dimethyl:2H(4) (K)">Dimethyl:2H(4) (K)</option> <option value="Dimethyl:2H(4) (N-term)">Dimethyl:2H(4) (N-term)</option> + <option value="Dimethyl:2H(4) (R)">Dimethyl:2H(4) (R)</option> <option value="Dimethyl:2H(4)13C(2) (K)">Dimethyl:2H(4)13C(2) (K)</option> <option value="Dimethyl:2H(4)13C(2) (N-term)">Dimethyl:2H(4)13C(2) (N-term)</option> + <option value="Dimethyl:2H(4)13C(2) (R)">Dimethyl:2H(4)13C(2) (R)</option> <option value="Dimethyl:2H(6) (K)">Dimethyl:2H(6) (K)</option> <option value="Dimethyl:2H(6) (N-term)">Dimethyl:2H(6) (N-term)</option> <option value="Dimethyl:2H(6) (R)">Dimethyl:2H(6) (R)</option> @@ -629,6 +880,7 @@ <option value="Dioxidation (M)">Dioxidation (M)</option> <option value="Dioxidation (P)">Dioxidation (P)</option> <option value="Dioxidation (R)">Dioxidation (R)</option> + <option value="Dioxidation (U)">Dioxidation (U)</option> <option value="Dioxidation (W)">Dioxidation (W)</option> <option value="Dioxidation (Y)">Dioxidation (Y)</option> <option value="Diphthamide (H)">Diphthamide (H)</option> @@ -696,6 +948,7 @@ <option value="FTC (S)">FTC (S)</option> <option value="Farnesyl (C)">Farnesyl (C)</option> <option value="Fluorescein (C)">Fluorescein (C)</option> + <option value="Fluorescein-tyramine (Y)">Fluorescein-tyramine (Y)</option> <option value="Fluoro (A)">Fluoro (A)</option> <option value="Fluoro (F)">Fluoro (F)</option> <option value="Fluoro (W)">Fluoro (W)</option> @@ -706,6 +959,7 @@ <option value="Formyl (T)">Formyl (T)</option> <option value="Furan (Y)">Furan (Y)</option> <option value="G-H1 (R)">G-H1 (R)</option> + <option value="GEE (Q)">GEE (Q)</option> <option value="GG (C)">GG (C)</option> <option value="GG (K)">GG (K)</option> <option value="GG (S)">GG (S)</option> @@ -720,6 +974,7 @@ <option value="GIST-Quat:2H(9) (K)">GIST-Quat:2H(9) (K)</option> <option value="GIST-Quat:2H(9) (N-term)">GIST-Quat:2H(9) (N-term)</option> <option value="Galactosyl (K)">Galactosyl (K)</option> + <option value="Galactosyl (N-term)">Galactosyl (N-term)</option> <option value="GeranylGeranyl (C)">GeranylGeranyl (C)</option> <option value="Gln->Ala (Q)">Gln->Ala (Q)</option> <option value="Gln->Arg (Q)">Gln->Arg (Q)</option> @@ -760,13 +1015,16 @@ <option value="Glu->Val (E)">Glu->Val (E)</option> <option value="Glu->Xle (E)">Glu->Xle (E)</option> <option value="Glu->pyro-Glu (N-term E)">Glu->pyro-Glu (N-term E)</option> + <option value="Glu->pyro-Glu+Methyl (N-term E)">Glu->pyro-Glu+Methyl (N-term E)</option> + <option value="Glu->pyro-Glu+Methyl (N-term E)">Glu->pyro-Glu+Methyl (N-term E)</option> + <option value="Glu->pyro-Glu+Methyl:2H(2)13C (N-term E)">Glu->pyro-Glu+Methyl:2H(2)13C (N-term E)</option> + <option value="Glu->pyro-Glu+Methyl:2H(2)13C(1) (N-term E)">Glu->pyro-Glu+Methyl:2H(2)13C(1) (N-term E)</option> <option value="GluGlu (E)">GluGlu (E)</option> <option value="GluGluGlu (E)">GluGluGlu (E)</option> <option value="GluGluGluGlu (E)">GluGluGluGlu (E)</option> - <option value="Gluconoylation (K)">Gluconoylation (K)</option> - <option value="Gluconoylation (N-term)">Gluconoylation (N-term)</option> <option value="Glucosylgalactosyl (K)">Glucosylgalactosyl (K)</option> <option value="Glucuronyl (S)">Glucuronyl (S)</option> + <option value="Glucuronyl (T)">Glucuronyl (T)</option> <option value="Glutathione (C)">Glutathione (C)</option> <option value="Gly (K)">Gly (K)</option> <option value="Gly (S)">Gly (S)</option> @@ -836,48 +1094,353 @@ <option value="Hex (T)">Hex (T)</option> <option value="Hex (W)">Hex (W)</option> <option value="Hex (Y)">Hex (Y)</option> + <option value="Hex(1)HexA(1) (S)">Hex(1)HexA(1) (S)</option> + <option value="Hex(1)HexA(1) (T)">Hex(1)HexA(1) (T)</option> + <option value="Hex(1)HexA(1)HexNAc(1) (S)">Hex(1)HexA(1)HexNAc(1) (S)</option> + <option value="Hex(1)HexA(1)HexNAc(1) (T)">Hex(1)HexA(1)HexNAc(1) (T)</option> + <option value="Hex(1)HexA(1)HexNAc(2) (S)">Hex(1)HexA(1)HexNAc(2) (S)</option> + <option value="Hex(1)HexA(1)HexNAc(2) (T)">Hex(1)HexA(1)HexNAc(2) (T)</option> + <option value="Hex(1)HexNAc(1) (N)">Hex(1)HexNAc(1) (N)</option> + <option value="Hex(1)HexNAc(1) (S)">Hex(1)HexNAc(1) (S)</option> + <option value="Hex(1)HexNAc(1) (T)">Hex(1)HexNAc(1) (T)</option> + <option value="Hex(1)HexNAc(1)Kdn(1)Sulf(1) (S)">Hex(1)HexNAc(1)Kdn(1)Sulf(1) (S)</option> + <option value="Hex(1)HexNAc(1)Kdn(1)Sulf(1) (T)">Hex(1)HexNAc(1)Kdn(1)Sulf(1) (T)</option> <option value="Hex(1)HexNAc(1)NeuAc(1) (N)">Hex(1)HexNAc(1)NeuAc(1) (N)</option> <option value="Hex(1)HexNAc(1)NeuAc(1) (S)">Hex(1)HexNAc(1)NeuAc(1) (S)</option> <option value="Hex(1)HexNAc(1)NeuAc(1) (T)">Hex(1)HexNAc(1)NeuAc(1) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1)Ac(1) (S)">Hex(1)HexNAc(1)NeuAc(1)Ac(1) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1)Ac(1) (T)">Hex(1)HexNAc(1)NeuAc(1)Ac(1) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (S)">Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (T)">Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (S)">Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (T)">Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (T)</option> <option value="Hex(1)HexNAc(1)NeuAc(2) (N)">Hex(1)HexNAc(1)NeuAc(2) (N)</option> <option value="Hex(1)HexNAc(1)NeuAc(2) (S)">Hex(1)HexNAc(1)NeuAc(2) (S)</option> <option value="Hex(1)HexNAc(1)NeuAc(2) (T)">Hex(1)HexNAc(1)NeuAc(2) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2)Ac(1) (S)">Hex(1)HexNAc(1)NeuAc(2)Ac(1) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2)Ac(1) (T)">Hex(1)HexNAc(1)NeuAc(2)Ac(1) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2)Ac(2) (S)">Hex(1)HexNAc(1)NeuAc(2)Ac(2) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2)Ac(2) (T)">Hex(1)HexNAc(1)NeuAc(2)Ac(2) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(3) (S)">Hex(1)HexNAc(1)NeuAc(3) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(3) (T)">Hex(1)HexNAc(1)NeuAc(3) (T)</option> + <option value="Hex(1)HexNAc(1)NeuGc(1) (S)">Hex(1)HexNAc(1)NeuGc(1) (S)</option> + <option value="Hex(1)HexNAc(1)NeuGc(1) (T)">Hex(1)HexNAc(1)NeuGc(1) (T)</option> + <option value="Hex(1)HexNAc(1)NeuGc(2) (S)">Hex(1)HexNAc(1)NeuGc(2) (S)</option> + <option value="Hex(1)HexNAc(1)NeuGc(2) (T)">Hex(1)HexNAc(1)NeuGc(2) (T)</option> + <option value="Hex(1)HexNAc(1)NeuGc(3) (S)">Hex(1)HexNAc(1)NeuGc(3) (S)</option> + <option value="Hex(1)HexNAc(1)NeuGc(3) (T)">Hex(1)HexNAc(1)NeuGc(3) (T)</option> + <option value="Hex(1)HexNAc(1)NeuGc(4) (S)">Hex(1)HexNAc(1)NeuGc(4) (S)</option> + <option value="Hex(1)HexNAc(1)NeuGc(4) (T)">Hex(1)HexNAc(1)NeuGc(4) (T)</option> + <option value="Hex(1)HexNAc(1)NeuGc(5) (S)">Hex(1)HexNAc(1)NeuGc(5) (S)</option> + <option value="Hex(1)HexNAc(1)NeuGc(5) (T)">Hex(1)HexNAc(1)NeuGc(5) (T)</option> + <option value="Hex(1)HexNAc(1)Phos(1) (S)">Hex(1)HexNAc(1)Phos(1) (S)</option> + <option value="Hex(1)HexNAc(1)Phos(1) (T)">Hex(1)HexNAc(1)Phos(1) (T)</option> + <option value="Hex(1)HexNAc(1)Sulf(1) (S)">Hex(1)HexNAc(1)Sulf(1) (S)</option> + <option value="Hex(1)HexNAc(1)Sulf(1) (T)">Hex(1)HexNAc(1)Sulf(1) (T)</option> <option value="Hex(1)HexNAc(1)dHex(1) (N)">Hex(1)HexNAc(1)dHex(1) (N)</option> + <option value="Hex(1)HexNAc(1)dHex(1) (S)">Hex(1)HexNAc(1)dHex(1) (S)</option> + <option value="Hex(1)HexNAc(1)dHex(1) (T)">Hex(1)HexNAc(1)dHex(1) (T)</option> + <option value="Hex(1)HexNAc(1)dHex(1)Me(1) (S)">Hex(1)HexNAc(1)dHex(1)Me(1) (S)</option> + <option value="Hex(1)HexNAc(1)dHex(1)Me(1) (T)">Hex(1)HexNAc(1)dHex(1)Me(1) (T)</option> + <option value="Hex(1)HexNAc(1)dHex(1)Me(2) (S)">Hex(1)HexNAc(1)dHex(1)Me(2) (S)</option> + <option value="Hex(1)HexNAc(1)dHex(1)Me(2) (T)">Hex(1)HexNAc(1)dHex(1)Me(2) (T)</option> <option value="Hex(1)HexNAc(2) (N)">Hex(1)HexNAc(2) (N)</option> + <option value="Hex(1)HexNAc(2) (S)">Hex(1)HexNAc(2) (S)</option> + <option value="Hex(1)HexNAc(2) (T)">Hex(1)HexNAc(2) (T)</option> + <option value="Hex(1)HexNAc(2)NeuAc(1) (S)">Hex(1)HexNAc(2)NeuAc(1) (S)</option> + <option value="Hex(1)HexNAc(2)NeuAc(1) (T)">Hex(1)HexNAc(2)NeuAc(1) (T)</option> + <option value="Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S)">Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S)</option> + <option value="Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T)">Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T)</option> + <option value="Hex(1)HexNAc(2)NeuAc(2) (S)">Hex(1)HexNAc(2)NeuAc(2) (S)</option> + <option value="Hex(1)HexNAc(2)NeuAc(2) (T)">Hex(1)HexNAc(2)NeuAc(2) (T)</option> + <option value="Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (S)">Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (S)</option> + <option value="Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (T)">Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (T)</option> + <option value="Hex(1)HexNAc(2)NeuGc(1) (S)">Hex(1)HexNAc(2)NeuGc(1) (S)</option> + <option value="Hex(1)HexNAc(2)NeuGc(1) (T)">Hex(1)HexNAc(2)NeuGc(1) (T)</option> <option value="Hex(1)HexNAc(2)Pent(1) (N)">Hex(1)HexNAc(2)Pent(1) (N)</option> + <option value="Hex(1)HexNAc(2)Sulf(1) (S)">Hex(1)HexNAc(2)Sulf(1) (S)</option> + <option value="Hex(1)HexNAc(2)Sulf(1) (T)">Hex(1)HexNAc(2)Sulf(1) (T)</option> <option value="Hex(1)HexNAc(2)dHex(1) (N)">Hex(1)HexNAc(2)dHex(1) (N)</option> + <option value="Hex(1)HexNAc(2)dHex(1) (S)">Hex(1)HexNAc(2)dHex(1) (S)</option> + <option value="Hex(1)HexNAc(2)dHex(1) (T)">Hex(1)HexNAc(2)dHex(1) (T)</option> <option value="Hex(1)HexNAc(2)dHex(1)Pent(1) (N)">Hex(1)HexNAc(2)dHex(1)Pent(1) 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<option value="Hex(3)HexNAc(6)NeuAc(1) (N)">Hex(3)HexNAc(6)NeuAc(1) (N)</option> + <option value="Hex(3)HexNAc(6)Sulf(1) (N)">Hex(3)HexNAc(6)Sulf(1) (N)</option> + <option value="Hex(3)HexNAc(6)Sulf(2) (N)">Hex(3)HexNAc(6)Sulf(2) (N)</option> + <option value="Hex(3)HexNAc(7) (N)">Hex(3)HexNAc(7) (N)</option> + <option value="Hex(3)HexNAc(7)Sulf(1) (N)">Hex(3)HexNAc(7)Sulf(1) (N)</option> + <option value="Hex(3)Phos(1) (S)">Hex(3)Phos(1) (S)</option> + <option value="Hex(3)Phos(1) (T)">Hex(3)Phos(1) (T)</option> + <option value="Hex(4) (S)">Hex(4) (S)</option> + <option value="Hex(4) (T)">Hex(4) (T)</option> + <option value="Hex(4)HexNAc(1) (S)">Hex(4)HexNAc(1) (S)</option> + <option value="Hex(4)HexNAc(1) (T)">Hex(4)HexNAc(1) (T)</option> + <option value="Hex(4)HexNAc(2) (N)">Hex(4)HexNAc(2) (N)</option> + <option value="Hex(4)HexNAc(2)NeuAc(1) (N)">Hex(4)HexNAc(2)NeuAc(1) (N)</option> + <option value="Hex(4)HexNAc(2)Pent(1) (N)">Hex(4)HexNAc(2)Pent(1) (N)</option> + <option 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value="Hex(4)HexNAc(4)NeuAc(1) (N)">Hex(4)HexNAc(4)NeuAc(1) (N)</option> + <option value="Hex(4)HexNAc(4)NeuAc(1) (S)">Hex(4)HexNAc(4)NeuAc(1) (S)</option> + <option value="Hex(4)HexNAc(4)NeuAc(1) (T)">Hex(4)HexNAc(4)NeuAc(1) (T)</option> + <option value="Hex(4)HexNAc(4)NeuAc(1)Sulf(2) (S)">Hex(4)HexNAc(4)NeuAc(1)Sulf(2) (S)</option> + <option value="Hex(4)HexNAc(4)NeuAc(1)Sulf(2) (T)">Hex(4)HexNAc(4)NeuAc(1)Sulf(2) (T)</option> + <option value="Hex(4)HexNAc(4)NeuAc(1)Sulf(3) (S)">Hex(4)HexNAc(4)NeuAc(1)Sulf(3) (S)</option> + <option value="Hex(4)HexNAc(4)NeuAc(1)Sulf(3) (T)">Hex(4)HexNAc(4)NeuAc(1)Sulf(3) (T)</option> + <option value="Hex(4)HexNAc(4)NeuGc(1)Sulf(2) (S)">Hex(4)HexNAc(4)NeuGc(1)Sulf(2) (S)</option> + <option value="Hex(4)HexNAc(4)NeuGc(1)Sulf(2) (T)">Hex(4)HexNAc(4)NeuGc(1)Sulf(2) (T)</option> + <option value="Hex(4)HexNAc(4)Pent(1) (N)">Hex(4)HexNAc(4)Pent(1) (N)</option> + <option value="Hex(4)HexNAc(4)Sulf(1) (N)">Hex(4)HexNAc(4)Sulf(1) (N)</option> + <option value="Hex(4)HexNAc(4)Sulf(2) (S)">Hex(4)HexNAc(4)Sulf(2) (S)</option> + <option value="Hex(4)HexNAc(4)Sulf(2) (T)">Hex(4)HexNAc(4)Sulf(2) (T)</option> + <option value="Hex(4)HexNAc(5) (N)">Hex(4)HexNAc(5) (N)</option> + <option value="Hex(4)HexNAc(5)NeuAc(1) (N)">Hex(4)HexNAc(5)NeuAc(1) (N)</option> + <option value="Hex(4)HexNAc(5)Sulf(1) (N)">Hex(4)HexNAc(5)Sulf(1) (N)</option> + <option value="Hex(4)HexNAc(6) (N)">Hex(4)HexNAc(6) (N)</option> + <option value="Hex(4)Phos(1) (S)">Hex(4)Phos(1) (S)</option> + <option value="Hex(4)Phos(1) (T)">Hex(4)Phos(1) (T)</option> + <option value="Hex(5) (S)">Hex(5) (S)</option> + <option value="Hex(5) (T)">Hex(5) (T)</option> + <option value="Hex(5)HexNAc(1) (S)">Hex(5)HexNAc(1) (S)</option> + <option value="Hex(5)HexNAc(1) (T)">Hex(5)HexNAc(1) (T)</option> <option value="Hex(5)HexNAc(2) (N)">Hex(5)HexNAc(2) (N)</option> + <option value="Hex(5)HexNAc(2)Phos(1) (N)">Hex(5)HexNAc(2)Phos(1) (N)</option> + <option value="Hex(5)HexNAc(3) (N)">Hex(5)HexNAc(3) (N)</option> + <option value="Hex(5)HexNAc(3)Pent(1) (N)">Hex(5)HexNAc(3)Pent(1) (N)</option> <option value="Hex(5)HexNAc(4) (N)">Hex(5)HexNAc(4) (N)</option> + <option value="Hex(5)HexNAc(4) (S)">Hex(5)HexNAc(4) (S)</option> + <option value="Hex(5)HexNAc(4) (T)">Hex(5)HexNAc(4) (T)</option> + <option value="Hex(5)HexNAc(4)Me(2)Pent(1) (N)">Hex(5)HexNAc(4)Me(2)Pent(1) (N)</option> <option value="Hex(5)HexNAc(4)NeuAc(1) (N)">Hex(5)HexNAc(4)NeuAc(1) (N)</option> + <option value="Hex(5)HexNAc(4)NeuAc(1)Sulf(1) (N)">Hex(5)HexNAc(4)NeuAc(1)Sulf(1) (N)</option> <option value="Hex(5)HexNAc(4)NeuAc(2) (N)">Hex(5)HexNAc(4)NeuAc(2) (N)</option> - <option value="Hex1HexNAc1 (N)">Hex1HexNAc1 (N)</option> - <option value="Hex1HexNAc1 (S)">Hex1HexNAc1 (S)</option> - <option value="Hex1HexNAc1 (T)">Hex1HexNAc1 (T)</option> + <option value="Hex(5)HexNAc(4)NeuGc(1) (N)">Hex(5)HexNAc(4)NeuGc(1) (N)</option> + <option value="Hex(5)HexNAc(4)Sulf(1) (N)">Hex(5)HexNAc(4)Sulf(1) (N)</option> + <option value="Hex(5)HexNAc(5) (N)">Hex(5)HexNAc(5) (N)</option> + <option value="Hex(5)HexNAc(5) (S)">Hex(5)HexNAc(5) (S)</option> + <option value="Hex(5)HexNAc(5) (T)">Hex(5)HexNAc(5) (T)</option> + <option value="Hex(5)Phos(1) (S)">Hex(5)Phos(1) (S)</option> + <option value="Hex(5)Phos(1) (T)">Hex(5)Phos(1) (T)</option> + <option value="Hex(5)Phos(3) (S)">Hex(5)Phos(3) (S)</option> + <option value="Hex(5)Phos(3) (T)">Hex(5)Phos(3) (T)</option> + <option value="Hex(6)HexNAc(2) (N)">Hex(6)HexNAc(2) (N)</option> + <option value="Hex(6)HexNAc(2)Phos(1) (N)">Hex(6)HexNAc(2)Phos(1) (N)</option> + <option value="Hex(6)HexNAc(3) (N)">Hex(6)HexNAc(3) (N)</option> + <option value="Hex(6)HexNAc(3)Phos(1) (N)">Hex(6)HexNAc(3)Phos(1) (N)</option> + <option value="Hex(6)HexNAc(4) (N)">Hex(6)HexNAc(4) (N)</option> + <option value="Hex(6)HexNAc(4) (S)">Hex(6)HexNAc(4) (S)</option> + <option value="Hex(6)HexNAc(4) (T)">Hex(6)HexNAc(4) (T)</option> + <option value="Hex(6)HexNAc(4)Me(3) (N)">Hex(6)HexNAc(4)Me(3) (N)</option> + <option value="Hex(6)HexNAc(4)Me(3)Pent(1) (N)">Hex(6)HexNAc(4)Me(3)Pent(1) (N)</option> + <option value="Hex(6)HexNAc(5) (N)">Hex(6)HexNAc(5) (N)</option> + <option value="Hex(6)Phos(1) (S)">Hex(6)Phos(1) (S)</option> + <option value="Hex(6)Phos(1) (T)">Hex(6)Phos(1) (T)</option> + <option value="Hex(6)Phos(3) (S)">Hex(6)Phos(3) (S)</option> + <option value="Hex(6)Phos(3) (T)">Hex(6)Phos(3) (T)</option> + <option value="Hex(7)HexNAc(1) (N)">Hex(7)HexNAc(1) (N)</option> + <option value="Hex(7)HexNAc(2) (N)">Hex(7)HexNAc(2) (N)</option> + <option value="Hex(7)HexNAc(2)Phos(1) (N)">Hex(7)HexNAc(2)Phos(1) (N)</option> + <option value="Hex(7)HexNAc(2)Phos(2) (N)">Hex(7)HexNAc(2)Phos(2) (N)</option> + <option value="Hex(7)HexNAc(3) (N)">Hex(7)HexNAc(3) (N)</option> + <option value="Hex(7)HexNAc(3)Phos(1) (N)">Hex(7)HexNAc(3)Phos(1) (N)</option> + <option value="Hex(7)HexNAc(4) (N)">Hex(7)HexNAc(4) (N)</option> + <option value="Hex(7)Phos(3) (S)">Hex(7)Phos(3) (S)</option> + <option value="Hex(7)Phos(3) (T)">Hex(7)Phos(3) (T)</option> + <option value="Hex(8)HexNAc(1) (N)">Hex(8)HexNAc(1) (N)</option> + <option value="Hex(8)HexNAc(2) (N)">Hex(8)HexNAc(2) (N)</option> + <option value="Hex(8)Phos(3) (S)">Hex(8)Phos(3) (S)</option> + <option value="Hex(8)Phos(3) (T)">Hex(8)Phos(3) (T)</option> + <option value="Hex(9)HexNAc(2) (N)">Hex(9)HexNAc(2) (N)</option> + <option value="Hex(9)Phos(3) (S)">Hex(9)Phos(3) (S)</option> + <option value="Hex(9)Phos(3) (T)">Hex(9)Phos(3) (T)</option> <option value="HexN (K)">HexN (K)</option> <option value="HexN (N)">HexN (N)</option> + <option value="HexN (S)">HexN (S)</option> <option value="HexN (T)">HexN (T)</option> <option value="HexN (W)">HexN (W)</option> <option value="HexNAc (N)">HexNAc (N)</option> <option value="HexNAc (S)">HexNAc (S)</option> <option value="HexNAc (T)">HexNAc (T)</option> + <option value="HexNAc(1)Kdn(2) (S)">HexNAc(1)Kdn(2) (S)</option> + <option value="HexNAc(1)Kdn(2) (T)">HexNAc(1)Kdn(2) (T)</option> + <option value="HexNAc(1)NeuAc(1) (S)">HexNAc(1)NeuAc(1) (S)</option> + <option value="HexNAc(1)NeuAc(1) (T)">HexNAc(1)NeuAc(1) (T)</option> + <option value="HexNAc(1)NeuGc(1) (S)">HexNAc(1)NeuGc(1) (S)</option> + <option value="HexNAc(1)NeuGc(1) (T)">HexNAc(1)NeuGc(1) (T)</option> + <option value="HexNAc(1)NeuGc(2) (S)">HexNAc(1)NeuGc(2) (S)</option> + <option value="HexNAc(1)NeuGc(2) (T)">HexNAc(1)NeuGc(2) (T)</option> <option value="HexNAc(1)dHex(1) (N)">HexNAc(1)dHex(1) (N)</option> + <option value="HexNAc(1)dHex(1) (S)">HexNAc(1)dHex(1) (S)</option> + <option value="HexNAc(1)dHex(1) (T)">HexNAc(1)dHex(1) (T)</option> <option value="HexNAc(1)dHex(2) (N)">HexNAc(1)dHex(2) (N)</option> <option value="HexNAc(2) (N)">HexNAc(2) (N)</option> + <option value="HexNAc(2) (S)">HexNAc(2) (S)</option> + <option value="HexNAc(2) (T)">HexNAc(2) (T)</option> + <option value="HexNAc(2)NeuAc(1) (S)">HexNAc(2)NeuAc(1) (S)</option> + <option value="HexNAc(2)NeuAc(1) (T)">HexNAc(2)NeuAc(1) (T)</option> + <option value="HexNAc(2)NeuAc(1)Sulf(1) (S)">HexNAc(2)NeuAc(1)Sulf(1) (S)</option> + <option value="HexNAc(2)NeuAc(1)Sulf(1) (T)">HexNAc(2)NeuAc(1)Sulf(1) (T)</option> + <option value="HexNAc(2)NeuGc(1) (S)">HexNAc(2)NeuGc(1) (S)</option> + <option value="HexNAc(2)NeuGc(1) (T)">HexNAc(2)NeuGc(1) (T)</option> <option value="HexNAc(2)dHex(1) (N)">HexNAc(2)dHex(1) (N)</option> <option value="HexNAc(2)dHex(2) (N)">HexNAc(2)dHex(2) (N)</option> + <option value="HexNAc(3) (S)">HexNAc(3) (S)</option> + <option value="HexNAc(3) (T)">HexNAc(3) (T)</option> + <option value="HexNAc(3)Sulf(1) (S)">HexNAc(3)Sulf(1) (S)</option> + <option value="HexNAc(3)Sulf(1) (T)">HexNAc(3)Sulf(1) (T)</option> + <option value="HexNAc(4) (S)">HexNAc(4) (S)</option> + <option value="HexNAc(4) (T)">HexNAc(4) (T)</option> + <option value="HexNAc(5) (S)">HexNAc(5) (S)</option> + <option value="HexNAc(5) (T)">HexNAc(5) (T)</option> <option value="His->Ala (H)">His->Ala (H)</option> <option value="His->Arg (H)">His->Arg (H)</option> <option value="His->Asn (H)">His->Asn (H)</option> @@ -906,6 +1469,7 @@ <option value="HydroxymethylOP (K)">HydroxymethylOP (K)</option> <option value="Hydroxytrimethyl (K)">Hydroxytrimethyl (K)</option> <option value="Hypusine (K)">Hypusine (K)</option> + <option value="IASD (C)">IASD (C)</option> <option value="IBTP (C)">IBTP (C)</option> <option value="ICAT-C (C)">ICAT-C (C)</option> <option value="ICAT-C:13C(9) (C)">ICAT-C:13C(9) (C)</option> @@ -960,8 +1524,11 @@ <option value="LG-pyrrole (K)">LG-pyrrole (K)</option> <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option> <option value="LRGG (K)">LRGG (K)</option> + <option value="LRGG+dimethyl (K)">LRGG+dimethyl (K)</option> + <option value="LRGG+methyl (K)">LRGG+methyl (K)</option> <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option> <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option> + <option value="Label:13C(2)15N(2) (K)">Label:13C(2)15N(2) (K)</option> <option value="Label:13C(3) (A)">Label:13C(3) (A)</option> <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option> <option value="Label:13C(4) (M)">Label:13C(4) (M)</option> @@ -991,7 +1558,6 @@ <option value="Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2) (R)">Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2) (R)</option> <option value="Label:13C(6)15N(4)+Methyl (R)">Label:13C(6)15N(4)+Methyl (R)</option> <option value="Label:13C(6)15N(4)+Methyl:2H(3)13C(1) (R)">Label:13C(6)15N(4)+Methyl:2H(3)13C(1) (R)</option> - <option value="Label:13C(8)15N(2) (R)">Label:13C(8)15N(2) (R)</option> <option value="Label:13C(9) (F)">Label:13C(9) (F)</option> <option value="Label:13C(9) (Y)">Label:13C(9) (Y)</option> <option value="Label:13C(9)+Phospho (Y)">Label:13C(9)+Phospho (Y)</option> @@ -1115,13 +1681,29 @@ <option value="Methyl+Deamidated (Q)">Methyl+Deamidated (Q)</option> <option value="Methyl-PEO12-Maleimide (C)">Methyl-PEO12-Maleimide (C)</option> <option value="Methyl:2H(2) (K)">Methyl:2H(2) (K)</option> - <option value="Methyl:2H(3) (C-term)">Methyl:2H(3) (C-term)</option> + <option value="Methyl:2H(2) (N-term)">Methyl:2H(2) (N-term)</option> + <option value="Methyl:2H(2)13C (C)">Methyl:2H(2)13C (C)</option> + <option value="Methyl:2H(2)13C (C-term)">Methyl:2H(2)13C (C-term)</option> + <option value="Methyl:2H(2)13C (D)">Methyl:2H(2)13C (D)</option> + <option value="Methyl:2H(2)13C (E)">Methyl:2H(2)13C (E)</option> + <option value="Methyl:2H(2)13C (H)">Methyl:2H(2)13C (H)</option> + <option value="Methyl:2H(2)13C (I)">Methyl:2H(2)13C (I)</option> + <option value="Methyl:2H(2)13C (K)">Methyl:2H(2)13C (K)</option> + <option value="Methyl:2H(2)13C (L)">Methyl:2H(2)13C (L)</option> + <option value="Methyl:2H(2)13C (N)">Methyl:2H(2)13C (N)</option> + <option value="Methyl:2H(2)13C (N-term)">Methyl:2H(2)13C (N-term)</option> + <option value="Methyl:2H(2)13C (Q)">Methyl:2H(2)13C (Q)</option> + <option value="Methyl:2H(2)13C (R)">Methyl:2H(2)13C (R)</option> + <option value="Methyl:2H(2)13C (S)">Methyl:2H(2)13C (S)</option> + <option value="Methyl:2H(2)13C (T)">Methyl:2H(2)13C (T)</option> <option value="Methyl:2H(3) (D)">Methyl:2H(3) (D)</option> <option value="Methyl:2H(3) (E)">Methyl:2H(3) (E)</option> <option value="Methyl:2H(3) (K)">Methyl:2H(3) (K)</option> <option value="Methyl:2H(3) (R)">Methyl:2H(3) (R)</option> + <option value="Methyl:2H(3) (X)">Methyl:2H(3) (X)</option> <option value="Methyl:2H(3)+Acetyl:2H(3) (K)">Methyl:2H(3)+Acetyl:2H(3) (K)</option> <option value="Methyl:2H(3)13C(1) (K)">Methyl:2H(3)13C(1) (K)</option> + <option value="Methyl:2H(3)13C(1) (N-term)">Methyl:2H(3)13C(1) (N-term)</option> <option value="Methyl:2H(3)13C(1) (R)">Methyl:2H(3)13C(1) (R)</option> <option value="Methylamine (S)">Methylamine (S)</option> <option value="Methylamine (T)">Methylamine (T)</option> @@ -1138,6 +1720,7 @@ <option value="Molybdopterin (C)">Molybdopterin (C)</option> <option value="MolybdopterinGD (C)">MolybdopterinGD (C)</option> <option value="MolybdopterinGD (D)">MolybdopterinGD (D)</option> + <option value="MolybdopterinGD (U)">MolybdopterinGD (U)</option> <option value="MolybdopterinGD+Delta:S(-1)Se(1) (C)">MolybdopterinGD+Delta:S(-1)Se(1) (C)</option> <option value="MurNAc (A)">MurNAc (A)</option> <option value="Myristoyl (C)">Myristoyl (C)</option> @@ -1169,6 +1752,8 @@ <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option> <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option> <option value="NO_SMX_SMCT (C)">NO_SMX_SMCT (C)</option> + <option value="NP40 (N-term)">NP40 (N-term)</option> + <option value="NQIGG (K)">NQIGG (K)</option> <option value="Nethylmaleimide (C)">Nethylmaleimide (C)</option> <option value="Nethylmaleimide+water (C)">Nethylmaleimide+water (C)</option> <option value="Nethylmaleimide+water (K)">Nethylmaleimide+water (K)</option> @@ -1218,6 +1803,7 @@ <option value="Oxidation (N)">Oxidation (N)</option> <option value="Oxidation (P)">Oxidation (P)</option> <option value="Oxidation (R)">Oxidation (R)</option> + <option value="Oxidation (U)">Oxidation (U)</option> <option value="Oxidation (W)">Oxidation (W)</option> <option value="Oxidation (Y)">Oxidation (Y)</option> <option value="Oxidation+NEM (C)">Oxidation+NEM (C)</option> @@ -1237,6 +1823,8 @@ <option value="Palmitoyl (K)">Palmitoyl (K)</option> <option value="Palmitoyl (S)">Palmitoyl (S)</option> <option value="Palmitoyl (T)">Palmitoyl (T)</option> + <option value="Pentose (S)">Pentose (S)</option> + <option value="Pentose (T)">Pentose (T)</option> <option value="Pentylamine (Q)">Pentylamine (Q)</option> <option value="Phe->Ala (F)">Phe->Ala (F)</option> <option value="Phe->Arg (F)">Phe->Arg (F)</option> @@ -1268,6 +1856,10 @@ <option value="Phospho (T)">Phospho (T)</option> <option value="Phospho (Y)">Phospho (Y)</option> <option value="PhosphoHex (S)">PhosphoHex (S)</option> + <option value="PhosphoHex (T)">PhosphoHex (T)</option> + <option value="PhosphoHex(2) (N)">PhosphoHex(2) (N)</option> + <option value="PhosphoHex(2) (S)">PhosphoHex(2) (S)</option> + <option value="PhosphoHex(2) (T)">PhosphoHex(2) (T)</option> <option value="PhosphoHexNAc (S)">PhosphoHexNAc (S)</option> <option value="PhosphoHexNAc (T)">PhosphoHexNAc (T)</option> <option value="PhosphoUridine (H)">PhosphoUridine (H)</option> @@ -1331,6 +1923,9 @@ <option value="Propiophenone (S)">Propiophenone (S)</option> <option value="Propiophenone (T)">Propiophenone (T)</option> <option value="Propiophenone (W)">Propiophenone (W)</option> + <option value="Propyl (C-term)">Propyl (C-term)</option> + <option value="Propyl (D)">Propyl (D)</option> + <option value="Propyl (E)">Propyl (E)</option> <option value="Propyl (K)">Propyl (K)</option> <option value="Propyl (N-term)">Propyl (N-term)</option> <option value="Propyl:2H(6) (K)">Propyl:2H(6) (K)</option> @@ -1352,6 +1947,8 @@ <option value="QTGG (K)">QTGG (K)</option> <option value="Quinone (W)">Quinone (W)</option> <option value="Quinone (Y)">Quinone (Y)</option> + <option value="RNPXL (N-term K)">RNPXL (N-term K)</option> + <option value="RNPXL (N-term R)">RNPXL (N-term R)</option> <option value="RNPXlink1 (C)">RNPXlink1 (C)</option> <option value="RNPXlink2 (F)">RNPXlink2 (F)</option> <option value="RNPXlink2 (K)">RNPXlink2 (K)</option> @@ -1373,9 +1970,6 @@ <option value="SUMO3549 (K)">SUMO3549 (K)</option> <option value="Saligenin (H)">Saligenin (H)</option> <option value="Saligenin (K)">Saligenin (K)</option> - <option value="SecCarbamidomethyl (C)">SecCarbamidomethyl (C)</option> - <option value="SecNEM (C)">SecNEM (C)</option> - <option value="SecNEM:2H(5) (C)">SecNEM:2H(5) (C)</option> <option value="Ser->Ala (S)">Ser->Ala (S)</option> <option value="Ser->Arg (S)">Ser->Arg (S)</option> <option value="Ser->Asn (S)">Ser->Asn (S)</option> @@ -1444,7 +2038,7 @@ <option value="Thiadiazole (C)">Thiadiazole (C)</option> <option value="Thiazolidine (N-term C)">Thiazolidine (N-term C)</option> <option value="Thioacyl (K)">Thioacyl (K)</option> - <option value="Thioacyl (N-term)">Thioacyl (N-term)</option> + <option value="Thioacyl (X)">Thioacyl (X)</option> <option value="Thiophos-S-S-biotin (S)">Thiophos-S-S-biotin (S)</option> <option value="Thiophos-S-S-biotin (T)">Thiophos-S-S-biotin (T)</option> <option value="Thiophos-S-S-biotin (Y)">Thiophos-S-S-biotin (Y)</option> @@ -1482,6 +2076,9 @@ <option value="Trioxidation (C)">Trioxidation (C)</option> <option value="Trioxidation (W)">Trioxidation (W)</option> <option value="Trioxidation (Y)">Trioxidation (Y)</option> + <option value="Tris (N)">Tris (N)</option> + <option value="Triton (C-term)">Triton (C-term)</option> + <option value="Triton (N-term)">Triton (N-term)</option> <option value="Trp->Ala (W)">Trp->Ala (W)</option> <option value="Trp->Arg (W)">Trp->Arg (W)</option> <option value="Trp->Asn (W)">Trp->Asn (W)</option> @@ -1503,6 +2100,8 @@ <option value="Trp->Tyr (W)">Trp->Tyr (W)</option> <option value="Trp->Val (W)">Trp->Val (W)</option> <option value="Trp->Xle (W)">Trp->Xle (W)</option> + <option value="Tween20 (N-term)">Tween20 (N-term)</option> + <option value="Tween80 (C-term)">Tween80 (C-term)</option> <option value="Tyr->Ala (Y)">Tyr->Ala (Y)</option> <option value="Tyr->Arg (Y)">Tyr->Arg (Y)</option> <option value="Tyr->Asn (Y)">Tyr->Asn (Y)</option> @@ -1594,6 +2193,7 @@ <option value="Xlink:DMP-de (K)">Xlink:DMP-de (K)</option> <option value="Xlink:DMP-s (K)">Xlink:DMP-s (K)</option> <option value="Xlink:DSS (K)">Xlink:DSS (K)</option> + <option value="Xlink:DSS-NH2 (K)">Xlink:DSS-NH2 (K)</option> <option value="Xlink:DST (K)">Xlink:DST (K)</option> <option value="Xlink:DTSSP (K)">Xlink:DTSSP (K)</option> <option value="Xlink:EGS (K)">Xlink:EGS (K)</option> @@ -1606,6 +2206,8 @@ <option value="azole (C)">azole (C)</option> <option value="azole (S)">azole (S)</option> <option value="benzylguanidine (K)">benzylguanidine (K)</option> + <option value="beta FNA (C)">beta FNA (C)</option> + <option value="beta FNA (K)">beta FNA (K)</option> <option value="biotinAcrolein298 (C)">biotinAcrolein298 (C)</option> <option value="biotinAcrolein298 (H)">biotinAcrolein298 (H)</option> <option value="biotinAcrolein298 (K)">biotinAcrolein298 (K)</option> @@ -1623,21 +2225,358 @@ <option value="dHex (T)">dHex (T)</option> <option value="dHex(1)Hex(1) (S)">dHex(1)Hex(1) (S)</option> <option value="dHex(1)Hex(1) (T)">dHex(1)Hex(1) (T)</option> + <option value="dHex(1)Hex(1)HexA(1)HexNAc(3) (S)">dHex(1)Hex(1)HexA(1)HexNAc(3) (S)</option> + <option value="dHex(1)Hex(1)HexA(1)HexNAc(3) (T)">dHex(1)Hex(1)HexA(1)HexNAc(3) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(1)Kdn(1) (S)">dHex(1)Hex(1)HexNAc(1)Kdn(1) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(1)Kdn(1) (T)">dHex(1)Hex(1)HexNAc(1)Kdn(1) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(1)NeuAc(1) (S)">dHex(1)Hex(1)HexNAc(1)NeuAc(1) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(1)NeuAc(1) (T)">dHex(1)Hex(1)HexNAc(1)NeuAc(1) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(1)NeuGc(1) (S)">dHex(1)Hex(1)HexNAc(1)NeuGc(1) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(1)NeuGc(1) (T)">dHex(1)Hex(1)HexNAc(1)NeuGc(1) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(2)Kdn(1) (S)">dHex(1)Hex(1)HexNAc(2)Kdn(1) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(2)Kdn(1) (T)">dHex(1)Hex(1)HexNAc(2)Kdn(1) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(2)NeuAc(1) (S)">dHex(1)Hex(1)HexNAc(2)NeuAc(1) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(2)NeuAc(1) (T)">dHex(1)Hex(1)HexNAc(2)NeuAc(1) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S)">dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T)">dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(2)NeuAc(2) (S)">dHex(1)Hex(1)HexNAc(2)NeuAc(2) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(2)NeuAc(2) (T)">dHex(1)Hex(1)HexNAc(2)NeuAc(2) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(2)NeuGc(1) (S)">dHex(1)Hex(1)HexNAc(2)NeuGc(1) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(2)NeuGc(1) (T)">dHex(1)Hex(1)HexNAc(2)NeuGc(1) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(2)Sulf(1) (S)">dHex(1)Hex(1)HexNAc(2)Sulf(1) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(2)Sulf(1) (T)">dHex(1)Hex(1)HexNAc(2)Sulf(1) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(3) (S)">dHex(1)Hex(1)HexNAc(3) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(3) (T)">dHex(1)Hex(1)HexNAc(3) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(3)NeuAc(1) (S)">dHex(1)Hex(1)HexNAc(3)NeuAc(1) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(3)NeuAc(1) (T)">dHex(1)Hex(1)HexNAc(3)NeuAc(1) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1) (S)">dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1) (T)">dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(3)NeuGc(1) (S)">dHex(1)Hex(1)HexNAc(3)NeuGc(1) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(3)NeuGc(1) (T)">dHex(1)Hex(1)HexNAc(3)NeuGc(1) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(3)Sulf(1) (S)">dHex(1)Hex(1)HexNAc(3)Sulf(1) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(3)Sulf(1) (T)">dHex(1)Hex(1)HexNAc(3)Sulf(1) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(4) (S)">dHex(1)Hex(1)HexNAc(4) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(4) (T)">dHex(1)Hex(1)HexNAc(4) (T)</option> <option value="dHex(1)Hex(2) (S)">dHex(1)Hex(2) (S)</option> <option value="dHex(1)Hex(2) (T)">dHex(1)Hex(2) (T)</option> + <option value="dHex(1)Hex(2)HexA(1) (S)">dHex(1)Hex(2)HexA(1) (S)</option> + <option value="dHex(1)Hex(2)HexA(1) (T)">dHex(1)Hex(2)HexA(1) (T)</option> + <option value="dHex(1)Hex(2)HexA(1)HexNAc(1) (S)">dHex(1)Hex(2)HexA(1)HexNAc(1) (S)</option> + <option value="dHex(1)Hex(2)HexA(1)HexNAc(1) (T)">dHex(1)Hex(2)HexA(1)HexNAc(1) (T)</option> + <option value="dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1) (S)">dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1) (S)</option> + <option value="dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1) (T)">dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1) (T)</option> + <option value="dHex(1)Hex(2)HexA(1)HexNAc(2) (S)">dHex(1)Hex(2)HexA(1)HexNAc(2) (S)</option> + <option value="dHex(1)Hex(2)HexA(1)HexNAc(2) (T)">dHex(1)Hex(2)HexA(1)HexNAc(2) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(1) (S)">dHex(1)Hex(2)HexNAc(1) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(1) (T)">dHex(1)Hex(2)HexNAc(1) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(1)Sulf(1) (S)">dHex(1)Hex(2)HexNAc(1)Sulf(1) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(1)Sulf(1) (T)">dHex(1)Hex(2)HexNAc(1)Sulf(1) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S)">dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T)">dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(2)NeuAc(2) (S)">dHex(1)Hex(2)HexNAc(2)NeuAc(2) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(2)NeuAc(2) (T)">dHex(1)Hex(2)HexNAc(2)NeuAc(2) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (S)">dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (T)">dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(2)NeuGc(1) (S)">dHex(1)Hex(2)HexNAc(2)NeuGc(1) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(2)NeuGc(1) (T)">dHex(1)Hex(2)HexNAc(2)NeuGc(1) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(2)NeuGc(2) (S)">dHex(1)Hex(2)HexNAc(2)NeuGc(2) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(2)NeuGc(2) (T)">dHex(1)Hex(2)HexNAc(2)NeuGc(2) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(2)NeuGc(3) (S)">dHex(1)Hex(2)HexNAc(2)NeuGc(3) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(2)NeuGc(3) (T)">dHex(1)Hex(2)HexNAc(2)NeuGc(3) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(2)Pent(1) (N)">dHex(1)Hex(2)HexNAc(2)Pent(1) (N)</option> + <option value="dHex(1)Hex(2)HexNAc(2)Sulf(1) (S)">dHex(1)Hex(2)HexNAc(2)Sulf(1) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(2)Sulf(1) (T)">dHex(1)Hex(2)HexNAc(2)Sulf(1) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(3) (N)">dHex(1)Hex(2)HexNAc(3) (N)</option> + <option value="dHex(1)Hex(2)HexNAc(3) (S)">dHex(1)Hex(2)HexNAc(3) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(3) (T)">dHex(1)Hex(2)HexNAc(3) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(3)NeuAc(1) (S)">dHex(1)Hex(2)HexNAc(3)NeuAc(1) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(3)NeuAc(1) (T)">dHex(1)Hex(2)HexNAc(3)NeuAc(1) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (S)">dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (T)">dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(3)Sulf(1) (S)">dHex(1)Hex(2)HexNAc(3)Sulf(1) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(3)Sulf(1) (T)">dHex(1)Hex(2)HexNAc(3)Sulf(1) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(4) (S)">dHex(1)Hex(2)HexNAc(4) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(4) (T)">dHex(1)Hex(2)HexNAc(4) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(4)NeuAc(1) (S)">dHex(1)Hex(2)HexNAc(4)NeuAc(1) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(4)NeuAc(1) (T)">dHex(1)Hex(2)HexNAc(4)NeuAc(1) (T)</option> + <option value="dHex(1)Hex(2)HexNAc(4)NeuAc(2) (S)">dHex(1)Hex(2)HexNAc(4)NeuAc(2) (S)</option> + <option value="dHex(1)Hex(2)HexNAc(4)NeuAc(2) (T)">dHex(1)Hex(2)HexNAc(4)NeuAc(2) (T)</option> <option value="dHex(1)Hex(3) (S)">dHex(1)Hex(3) (S)</option> <option value="dHex(1)Hex(3) (T)">dHex(1)Hex(3) (T)</option> + <option value="dHex(1)Hex(3)HexA(1)HexNAc(1) (S)">dHex(1)Hex(3)HexA(1)HexNAc(1) (S)</option> + <option value="dHex(1)Hex(3)HexA(1)HexNAc(1) (T)">dHex(1)Hex(3)HexA(1)HexNAc(1) (T)</option> + <option value="dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1) (S)">dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1) (S)</option> + <option value="dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1) (T)">dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1) (T)</option> + <option value="dHex(1)Hex(3)HexA(1)HexNAc(2) (S)">dHex(1)Hex(3)HexA(1)HexNAc(2) (S)</option> + <option value="dHex(1)Hex(3)HexA(1)HexNAc(2) (T)">dHex(1)Hex(3)HexA(1)HexNAc(2) (T)</option> + <option value="dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1) (S)">dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1) (S)</option> + <option value="dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1) (T)">dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1) (T)</option> + <option value="dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1) (S)">dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1) (S)</option> + <option value="dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1) (T)">dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1) (T)</option> + <option value="dHex(1)Hex(3)HexA(2)HexNAc(2) 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value="dHex(2)Hex(2)HexNAc(5) (S)">dHex(2)Hex(2)HexNAc(5) (S)</option> + <option value="dHex(2)Hex(2)HexNAc(5) (T)">dHex(2)Hex(2)HexNAc(5) (T)</option> + <option value="dHex(2)Hex(3) (S)">dHex(2)Hex(3) (S)</option> + <option value="dHex(2)Hex(3) (T)">dHex(2)Hex(3) (T)</option> + <option value="dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1) (S)">dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1) (S)</option> + <option value="dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1) (T)">dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1) (T)</option> + <option value="dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1) (S)">dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1) (S)</option> + <option value="dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1) (T)">dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1) (T)</option> + <option value="dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1) (S)">dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1) (S)</option> + <option value="dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1) (T)">dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(1)Sulf(1) (S)">dHex(2)Hex(3)HexNAc(1)Sulf(1) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(1)Sulf(1) (T)">dHex(2)Hex(3)HexNAc(1)Sulf(1) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(2) (N)">dHex(2)Hex(3)HexNAc(2) (N)</option> + <option value="dHex(2)Hex(3)HexNAc(2) (S)">dHex(2)Hex(3)HexNAc(2) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(2) (T)">dHex(2)Hex(3)HexNAc(2) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(2)NeuGc(1) (S)">dHex(2)Hex(3)HexNAc(2)NeuGc(1) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(2)NeuGc(1) (T)">dHex(2)Hex(3)HexNAc(2)NeuGc(1) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(2)Sulf(1) (S)">dHex(2)Hex(3)HexNAc(2)Sulf(1) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(2)Sulf(1) (T)">dHex(2)Hex(3)HexNAc(2)Sulf(1) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(3) (N)">dHex(2)Hex(3)HexNAc(3) (N)</option> + <option value="dHex(2)Hex(3)HexNAc(3) (S)">dHex(2)Hex(3)HexNAc(3) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(3) (T)">dHex(2)Hex(3)HexNAc(3) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(3)NeuAc(1) (S)">dHex(2)Hex(3)HexNAc(3)NeuAc(1) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(3)NeuAc(1) (T)">dHex(2)Hex(3)HexNAc(3)NeuAc(1) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(3)NeuAc(2) (S)">dHex(2)Hex(3)HexNAc(3)NeuAc(2) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(3)NeuAc(2) (T)">dHex(2)Hex(3)HexNAc(3)NeuAc(2) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(3)NeuGc(1) (S)">dHex(2)Hex(3)HexNAc(3)NeuGc(1) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(3)NeuGc(1) (T)">dHex(2)Hex(3)HexNAc(3)NeuGc(1) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(3)Pent(1) (N)">dHex(2)Hex(3)HexNAc(3)Pent(1) (N)</option> + <option value="dHex(2)Hex(3)HexNAc(3)Pent(2) (N)">dHex(2)Hex(3)HexNAc(3)Pent(2) (N)</option> + <option value="dHex(2)Hex(3)HexNAc(4) (N)">dHex(2)Hex(3)HexNAc(4) (N)</option> + <option value="dHex(2)Hex(3)HexNAc(4) (S)">dHex(2)Hex(3)HexNAc(4) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(4) (T)">dHex(2)Hex(3)HexNAc(4) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(4)Pent(1) (N)">dHex(2)Hex(3)HexNAc(4)Pent(1) (N)</option> + <option value="dHex(2)Hex(3)HexNAc(4)Pent(2) (N)">dHex(2)Hex(3)HexNAc(4)Pent(2) (N)</option> + <option value="dHex(2)Hex(3)HexNAc(5) (S)">dHex(2)Hex(3)HexNAc(5) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(5) (T)">dHex(2)Hex(3)HexNAc(5) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(6) (N)">dHex(2)Hex(3)HexNAc(6) (N)</option> + <option value="dHex(2)Hex(4) (S)">dHex(2)Hex(4) (S)</option> + <option value="dHex(2)Hex(4) (T)">dHex(2)Hex(4) (T)</option> + <option value="dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (S)">dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (S)</option> + <option value="dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (T)">dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (T)</option> + <option value="dHex(2)Hex(4)HexNAc(1) (S)">dHex(2)Hex(4)HexNAc(1) (S)</option> + <option value="dHex(2)Hex(4)HexNAc(1) (T)">dHex(2)Hex(4)HexNAc(1) (T)</option> + <option value="dHex(2)Hex(4)HexNAc(2) (N)">dHex(2)Hex(4)HexNAc(2) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(2) (S)">dHex(2)Hex(4)HexNAc(2) (S)</option> + <option value="dHex(2)Hex(4)HexNAc(2) (T)">dHex(2)Hex(4)HexNAc(2) (T)</option> + <option value="dHex(2)Hex(4)HexNAc(3) (N)">dHex(2)Hex(4)HexNAc(3) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1) (N)">dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(3)Pent(1) (N)">dHex(2)Hex(4)HexNAc(3)Pent(1) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(4) (N)">dHex(2)Hex(4)HexNAc(4) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(4) (S)">dHex(2)Hex(4)HexNAc(4) (S)</option> + <option value="dHex(2)Hex(4)HexNAc(4) (T)">dHex(2)Hex(4)HexNAc(4) (T)</option> + <option value="dHex(2)Hex(4)HexNAc(4)Pent(1) (N)">dHex(2)Hex(4)HexNAc(4)Pent(1) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(4)Sulf(1) (N)">dHex(2)Hex(4)HexNAc(4)Sulf(1) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(5) (N)">dHex(2)Hex(4)HexNAc(5) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(5) (S)">dHex(2)Hex(4)HexNAc(5) (S)</option> + <option value="dHex(2)Hex(4)HexNAc(5) (T)">dHex(2)Hex(4)HexNAc(5) (T)</option> + <option value="dHex(2)Hex(5)HexNAc(3)Pent(1) (N)">dHex(2)Hex(5)HexNAc(3)Pent(1) (N)</option> + <option value="dHex(2)Hex(5)HexNAc(4) (N)">dHex(2)Hex(5)HexNAc(4) (N)</option> + <option value="dHex(2)HexNAc(2)Kdn(1) (S)">dHex(2)HexNAc(2)Kdn(1) (S)</option> + <option value="dHex(2)HexNAc(2)Kdn(1) (T)">dHex(2)HexNAc(2)Kdn(1) (T)</option> + <option value="dHex(2)HexNAc(5) (S)">dHex(2)HexNAc(5) (S)</option> + <option value="dHex(2)HexNAc(5) (T)">dHex(2)HexNAc(5) (T)</option> + <option value="dHex(2)HexNAc(7) (S)">dHex(2)HexNAc(7) (S)</option> + <option value="dHex(2)HexNAc(7) (T)">dHex(2)HexNAc(7) (T)</option> + <option value="dHex(3)Hex(1)HexNAc(2)Kdn(1) (S)">dHex(3)Hex(1)HexNAc(2)Kdn(1) (S)</option> + <option value="dHex(3)Hex(1)HexNAc(2)Kdn(1) (T)">dHex(3)Hex(1)HexNAc(2)Kdn(1) (T)</option> + <option value="dHex(3)Hex(1)HexNAc(3)Kdn(1) (S)">dHex(3)Hex(1)HexNAc(3)Kdn(1) (S)</option> + <option value="dHex(3)Hex(1)HexNAc(3)Kdn(1) (T)">dHex(3)Hex(1)HexNAc(3)Kdn(1) (T)</option> + <option value="dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (S)">dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (S)</option> + <option value="dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (T)">dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (T)</option> + <option value="dHex(3)Hex(2)HexNAc(2) (S)">dHex(3)Hex(2)HexNAc(2) (S)</option> + <option value="dHex(3)Hex(2)HexNAc(2) (T)">dHex(3)Hex(2)HexNAc(2) (T)</option> + <option value="dHex(3)Hex(2)HexNAc(2)Kdn(1) (S)">dHex(3)Hex(2)HexNAc(2)Kdn(1) (S)</option> + <option value="dHex(3)Hex(2)HexNAc(2)Kdn(1) (T)">dHex(3)Hex(2)HexNAc(2)Kdn(1) (T)</option> + <option value="dHex(3)Hex(2)HexNAc(3) (S)">dHex(3)Hex(2)HexNAc(3) (S)</option> + <option value="dHex(3)Hex(2)HexNAc(3) (T)">dHex(3)Hex(2)HexNAc(3) (T)</option> + <option value="dHex(3)Hex(2)HexNAc(3)Kdn(1) (S)">dHex(3)Hex(2)HexNAc(3)Kdn(1) (S)</option> + <option value="dHex(3)Hex(2)HexNAc(3)Kdn(1) (T)">dHex(3)Hex(2)HexNAc(3)Kdn(1) (T)</option> + <option value="dHex(3)Hex(2)HexNAc(4) (S)">dHex(3)Hex(2)HexNAc(4) (S)</option> + <option value="dHex(3)Hex(2)HexNAc(4) (T)">dHex(3)Hex(2)HexNAc(4) (T)</option> + <option value="dHex(3)Hex(3)HexNAc(3) (S)">dHex(3)Hex(3)HexNAc(3) (S)</option> + <option value="dHex(3)Hex(3)HexNAc(3) (T)">dHex(3)Hex(3)HexNAc(3) (T)</option> + <option value="dHex(3)Hex(3)HexNAc(3)NeuAc(1) (S)">dHex(3)Hex(3)HexNAc(3)NeuAc(1) (S)</option> + <option value="dHex(3)Hex(3)HexNAc(3)NeuAc(1) (T)">dHex(3)Hex(3)HexNAc(3)NeuAc(1) (T)</option> + <option value="dHex(3)Hex(3)HexNAc(3)Pent(1) (N)">dHex(3)Hex(3)HexNAc(3)Pent(1) (N)</option> + <option value="dHex(3)Hex(3)HexNAc(4) (N)">dHex(3)Hex(3)HexNAc(4) (N)</option> + <option value="dHex(3)Hex(3)HexNAc(4)Pent(1) (N)">dHex(3)Hex(3)HexNAc(4)Pent(1) (N)</option> + <option value="dHex(3)Hex(4)HexNAc(4) (N)">dHex(3)Hex(4)HexNAc(4) (N)</option> + <option value="dHex(3)Hex(4)HexNAc(4) (S)">dHex(3)Hex(4)HexNAc(4) (S)</option> + <option value="dHex(3)Hex(4)HexNAc(4) (T)">dHex(3)Hex(4)HexNAc(4) (T)</option> + <option value="dHex(3)Hex(4)HexNAc(4)Sulf(1) (N)">dHex(3)Hex(4)HexNAc(4)Sulf(1) (N)</option> + <option value="dHex(3)HexNAc(3)Kdn(1) (S)">dHex(3)HexNAc(3)Kdn(1) (S)</option> + <option value="dHex(3)HexNAc(3)Kdn(1) (T)">dHex(3)HexNAc(3)Kdn(1) (T)</option> + <option value="dHex(4)Hex(1)HexNAc(1)Kdn(2) (S)">dHex(4)Hex(1)HexNAc(1)Kdn(2) (S)</option> + <option value="dHex(4)Hex(1)HexNAc(1)Kdn(2) (T)">dHex(4)Hex(1)HexNAc(1)Kdn(2) (T)</option> + <option value="dHex(4)Hex(1)HexNAc(2)Kdn(1) (S)">dHex(4)Hex(1)HexNAc(2)Kdn(1) (S)</option> + <option value="dHex(4)Hex(1)HexNAc(2)Kdn(1) (T)">dHex(4)Hex(1)HexNAc(2)Kdn(1) (T)</option> + <option value="dHex(4)Hex(1)HexNAc(3)Kdn(1) (S)">dHex(4)Hex(1)HexNAc(3)Kdn(1) (S)</option> + <option value="dHex(4)Hex(1)HexNAc(3)Kdn(1) (T)">dHex(4)Hex(1)HexNAc(3)Kdn(1) (T)</option> + <option value="dHex(4)Hex(2)HexNAc(2)Kdn(1) (S)">dHex(4)Hex(2)HexNAc(2)Kdn(1) (S)</option> + <option value="dHex(4)Hex(2)HexNAc(2)Kdn(1) (T)">dHex(4)Hex(2)HexNAc(2)Kdn(1) (T)</option> + <option value="dHex(4)Hex(2)HexNAc(3) (S)">dHex(4)Hex(2)HexNAc(3) (S)</option> + <option value="dHex(4)Hex(2)HexNAc(3) (T)">dHex(4)Hex(2)HexNAc(3) (T)</option> + <option value="dHex(4)Hex(3)HexNAc(3) (S)">dHex(4)Hex(3)HexNAc(3) (S)</option> + <option value="dHex(4)Hex(3)HexNAc(3) (T)">dHex(4)Hex(3)HexNAc(3) (T)</option> + <option value="dHex(4)HexNAc(3)Kdn(1) (S)">dHex(4)HexNAc(3)Kdn(1) (S)</option> + <option value="dHex(4)HexNAc(3)Kdn(1) (T)">dHex(4)HexNAc(3)Kdn(1) (T)</option> <option value="dNIC (K)">dNIC (K)</option> <option value="dNIC (N-term)">dNIC (N-term)</option> <option value="dichlorination (C)">dichlorination (C)</option> @@ -1717,13 +2656,18 @@ <option value="pupylation (K)">pupylation (K)</option> <option value="pyrophospho (S)">pyrophospho (S)</option> <option value="pyrophospho (T)">pyrophospho (T)</option> + <option value="s-GlcNAc (S)">s-GlcNAc (S)</option> + <option value="s-GlcNAc (T)">s-GlcNAc (T)</option> + <option value="spermidine (Q)">spermidine (Q)</option> + <option value="spermine (Q)">spermine (Q)</option> <option value="sulfo+amino (Y)">sulfo+amino (Y)</option> <option value="thioacylPA (K)">thioacylPA (K)</option> <option value="trifluoro (L)">trifluoro (L)</option> </param> </repeat> <repeat name="rep_param_variable_modifications" min="0" max="1" title="param_variable_modifications"> - <param name="param_variable_modifications" type="select" optional="True" label="Variable modifications, specified using UniMod (www.unimod.org) terms," help="(-variable_modifications) e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'"> + <param name="param_variable_modifications" type="select" optional="True" label="Variable modifications, specified using Unimod (www.unimod.org) terms," help="(-variable_modifications) e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'"> + <option value="15N-oxobutanoic (N-term C)">15N-oxobutanoic (N-term C)</option> <option value="2-dimethylsuccinyl (C)">2-dimethylsuccinyl (C)</option> <option value="2-monomethylsuccinyl (C)">2-monomethylsuccinyl (C)</option> <option value="2-nitrobenzyl (Y)">2-nitrobenzyl (Y)</option> @@ -1746,6 +2690,7 @@ <option value="ADP-Ribosyl (N)">ADP-Ribosyl (N)</option> <option value="ADP-Ribosyl (R)">ADP-Ribosyl (R)</option> <option value="ADP-Ribosyl (S)">ADP-Ribosyl (S)</option> + <option value="ADP-Ribosyl (T)">ADP-Ribosyl (T)</option> <option value="AEBS (H)">AEBS (H)</option> <option value="AEBS (K)">AEBS (K)</option> <option value="AEBS (S)">AEBS (S)</option> @@ -1877,7 +2822,6 @@ <option value="BDMAPP (K)">BDMAPP (K)</option> <option value="BDMAPP (W)">BDMAPP (W)</option> <option value="BDMAPP (Y)">BDMAPP (Y)</option> - <option value="BHAc (K)">BHAc (K)</option> <option value="BHT (C)">BHT (C)</option> <option value="BHT (H)">BHT (H)</option> <option value="BHT (K)">BHT (K)</option> @@ -1902,23 +2846,28 @@ <option value="Biotin-phenacyl (C)">Biotin-phenacyl (C)</option> <option value="Biotin-phenacyl (H)">Biotin-phenacyl (H)</option> <option value="Biotin-phenacyl (S)">Biotin-phenacyl (S)</option> + <option value="Biotin-tyramide (Y)">Biotin-tyramide (Y)</option> <option value="Biotin:Cayman-10013 (C)">Biotin:Cayman-10013 (C)</option> <option value="Biotin:Cayman-10141 (C)">Biotin:Cayman-10141 (C)</option> <option value="Biotin:Invitrogen-M1602 (C)">Biotin:Invitrogen-M1602 (C)</option> <option value="Biotin:Sigma-B1267 (C)">Biotin:Sigma-B1267 (C)</option> <option value="Biotin:Thermo-21325 (K)">Biotin:Thermo-21325 (K)</option> + <option value="Biotin:Thermo-21330 (K)">Biotin:Thermo-21330 (K)</option> + <option value="Biotin:Thermo-21330 (N-term)">Biotin:Thermo-21330 (N-term)</option> <option value="Biotin:Thermo-21345 (Q)">Biotin:Thermo-21345 (Q)</option> - <option value="Biotin:Thermo-21360 (C-term)">Biotin:Thermo-21360 (C-term)</option> + <option value="Biotin:Thermo-21360 (X)">Biotin:Thermo-21360 (X)</option> <option value="Biotin:Thermo-21901+2H2O (C)">Biotin:Thermo-21901+2H2O (C)</option> <option value="Biotin:Thermo-21901+H2O (C)">Biotin:Thermo-21901+H2O (C)</option> <option value="Biotin:Thermo-21911 (C)">Biotin:Thermo-21911 (C)</option> - <option value="Biotin:Thermo-33033 (N-term)">Biotin:Thermo-33033 (N-term)</option> - <option value="Biotin:Thermo-33033-H (N-term)">Biotin:Thermo-33033-H (N-term)</option> + <option value="Biotin:Thermo-33033 (X)">Biotin:Thermo-33033 (X)</option> + <option value="Biotin:Thermo-33033-H (X)">Biotin:Thermo-33033-H (X)</option> <option value="Biotin:Thermo-88310 (K)">Biotin:Thermo-88310 (K)</option> <option value="Biotin:Thermo-88317 (S)">Biotin:Thermo-88317 (S)</option> <option value="Biotin:Thermo-88317 (Y)">Biotin:Thermo-88317 (Y)</option> <option value="BisANS (K)">BisANS (K)</option> <option value="Bodipy (C)">Bodipy (C)</option> + <option value="Brij35 (N-term)">Brij35 (N-term)</option> + <option value="Brij58 (N-term)">Brij58 (N-term)</option> <option value="Bromo (F)">Bromo (F)</option> <option value="Bromo (H)">Bromo (H)</option> <option value="Bromo (W)">Bromo (W)</option> @@ -1939,6 +2888,226 @@ <option value="CLIP_TRAQ_4 (K)">CLIP_TRAQ_4 (K)</option> <option value="CLIP_TRAQ_4 (N-term)">CLIP_TRAQ_4 (N-term)</option> <option value="CLIP_TRAQ_4 (Y)">CLIP_TRAQ_4 (Y)</option> + <option value="CUSTOM0 (A)">CUSTOM0 (A)</option> + <option value="CUSTOM0 (C)">CUSTOM0 (C)</option> + <option value="CUSTOM0 (C-term)">CUSTOM0 (C-term)</option> + <option value="CUSTOM0 (D)">CUSTOM0 (D)</option> + <option value="CUSTOM0 (E)">CUSTOM0 (E)</option> + <option value="CUSTOM0 (F)">CUSTOM0 (F)</option> + <option value="CUSTOM0 (G)">CUSTOM0 (G)</option> + <option value="CUSTOM0 (H)">CUSTOM0 (H)</option> + <option value="CUSTOM0 (I)">CUSTOM0 (I)</option> + <option value="CUSTOM0 (K)">CUSTOM0 (K)</option> + <option value="CUSTOM0 (L)">CUSTOM0 (L)</option> + <option value="CUSTOM0 (M)">CUSTOM0 (M)</option> + <option value="CUSTOM0 (N)">CUSTOM0 (N)</option> + <option value="CUSTOM0 (N-term)">CUSTOM0 (N-term)</option> + <option value="CUSTOM0 (P)">CUSTOM0 (P)</option> + <option value="CUSTOM0 (Q)">CUSTOM0 (Q)</option> + <option value="CUSTOM0 (R)">CUSTOM0 (R)</option> + <option value="CUSTOM0 (S)">CUSTOM0 (S)</option> + <option value="CUSTOM0 (T)">CUSTOM0 (T)</option> + <option value="CUSTOM0 (V)">CUSTOM0 (V)</option> + <option value="CUSTOM0 (W)">CUSTOM0 (W)</option> + <option value="CUSTOM0 (Y)">CUSTOM0 (Y)</option> + <option value="CUSTOM1 (A)">CUSTOM1 (A)</option> + <option value="CUSTOM1 (C)">CUSTOM1 (C)</option> + <option value="CUSTOM1 (C-term)">CUSTOM1 (C-term)</option> + <option value="CUSTOM1 (D)">CUSTOM1 (D)</option> + <option value="CUSTOM1 (E)">CUSTOM1 (E)</option> + <option value="CUSTOM1 (F)">CUSTOM1 (F)</option> + <option value="CUSTOM1 (G)">CUSTOM1 (G)</option> + <option value="CUSTOM1 (H)">CUSTOM1 (H)</option> + <option value="CUSTOM1 (I)">CUSTOM1 (I)</option> + <option value="CUSTOM1 (K)">CUSTOM1 (K)</option> + <option value="CUSTOM1 (L)">CUSTOM1 (L)</option> + <option value="CUSTOM1 (M)">CUSTOM1 (M)</option> + <option value="CUSTOM1 (N)">CUSTOM1 (N)</option> + <option value="CUSTOM1 (N-term)">CUSTOM1 (N-term)</option> + <option value="CUSTOM1 (P)">CUSTOM1 (P)</option> + <option value="CUSTOM1 (Q)">CUSTOM1 (Q)</option> + <option value="CUSTOM1 (R)">CUSTOM1 (R)</option> + <option value="CUSTOM1 (S)">CUSTOM1 (S)</option> + <option value="CUSTOM1 (T)">CUSTOM1 (T)</option> + <option value="CUSTOM1 (V)">CUSTOM1 (V)</option> + <option value="CUSTOM1 (W)">CUSTOM1 (W)</option> + <option value="CUSTOM1 (Y)">CUSTOM1 (Y)</option> + <option value="CUSTOM2 (A)">CUSTOM2 (A)</option> + <option value="CUSTOM2 (C)">CUSTOM2 (C)</option> + <option value="CUSTOM2 (C-term)">CUSTOM2 (C-term)</option> + <option value="CUSTOM2 (D)">CUSTOM2 (D)</option> + <option value="CUSTOM2 (E)">CUSTOM2 (E)</option> + <option value="CUSTOM2 (F)">CUSTOM2 (F)</option> + <option value="CUSTOM2 (G)">CUSTOM2 (G)</option> + <option value="CUSTOM2 (H)">CUSTOM2 (H)</option> + <option value="CUSTOM2 (I)">CUSTOM2 (I)</option> + <option value="CUSTOM2 (K)">CUSTOM2 (K)</option> + <option value="CUSTOM2 (L)">CUSTOM2 (L)</option> + <option value="CUSTOM2 (M)">CUSTOM2 (M)</option> + <option value="CUSTOM2 (N)">CUSTOM2 (N)</option> + <option value="CUSTOM2 (N-term)">CUSTOM2 (N-term)</option> + <option value="CUSTOM2 (P)">CUSTOM2 (P)</option> + <option value="CUSTOM2 (Q)">CUSTOM2 (Q)</option> + <option value="CUSTOM2 (R)">CUSTOM2 (R)</option> + <option value="CUSTOM2 (S)">CUSTOM2 (S)</option> + <option value="CUSTOM2 (T)">CUSTOM2 (T)</option> + <option value="CUSTOM2 (V)">CUSTOM2 (V)</option> + <option value="CUSTOM2 (W)">CUSTOM2 (W)</option> + <option value="CUSTOM2 (Y)">CUSTOM2 (Y)</option> + <option value="CUSTOM3 (A)">CUSTOM3 (A)</option> + <option value="CUSTOM3 (C)">CUSTOM3 (C)</option> + <option value="CUSTOM3 (C-term)">CUSTOM3 (C-term)</option> + <option value="CUSTOM3 (D)">CUSTOM3 (D)</option> + <option value="CUSTOM3 (E)">CUSTOM3 (E)</option> + <option value="CUSTOM3 (F)">CUSTOM3 (F)</option> + <option value="CUSTOM3 (G)">CUSTOM3 (G)</option> + <option value="CUSTOM3 (H)">CUSTOM3 (H)</option> + <option value="CUSTOM3 (I)">CUSTOM3 (I)</option> + <option value="CUSTOM3 (K)">CUSTOM3 (K)</option> + <option value="CUSTOM3 (L)">CUSTOM3 (L)</option> + <option value="CUSTOM3 (M)">CUSTOM3 (M)</option> + <option value="CUSTOM3 (N)">CUSTOM3 (N)</option> + <option value="CUSTOM3 (N-term)">CUSTOM3 (N-term)</option> + <option value="CUSTOM3 (P)">CUSTOM3 (P)</option> + <option value="CUSTOM3 (Q)">CUSTOM3 (Q)</option> + <option value="CUSTOM3 (R)">CUSTOM3 (R)</option> + <option value="CUSTOM3 (S)">CUSTOM3 (S)</option> + <option value="CUSTOM3 (T)">CUSTOM3 (T)</option> + <option value="CUSTOM3 (V)">CUSTOM3 (V)</option> + <option value="CUSTOM3 (W)">CUSTOM3 (W)</option> + <option value="CUSTOM3 (Y)">CUSTOM3 (Y)</option> + <option value="CUSTOM4 (A)">CUSTOM4 (A)</option> + <option value="CUSTOM4 (C)">CUSTOM4 (C)</option> + <option value="CUSTOM4 (C-term)">CUSTOM4 (C-term)</option> + <option value="CUSTOM4 (D)">CUSTOM4 (D)</option> + <option value="CUSTOM4 (E)">CUSTOM4 (E)</option> + <option value="CUSTOM4 (F)">CUSTOM4 (F)</option> + <option value="CUSTOM4 (G)">CUSTOM4 (G)</option> + <option value="CUSTOM4 (H)">CUSTOM4 (H)</option> + <option value="CUSTOM4 (I)">CUSTOM4 (I)</option> + <option value="CUSTOM4 (K)">CUSTOM4 (K)</option> + <option value="CUSTOM4 (L)">CUSTOM4 (L)</option> + <option value="CUSTOM4 (M)">CUSTOM4 (M)</option> + <option value="CUSTOM4 (N)">CUSTOM4 (N)</option> + <option value="CUSTOM4 (N-term)">CUSTOM4 (N-term)</option> + <option value="CUSTOM4 (P)">CUSTOM4 (P)</option> + <option value="CUSTOM4 (Q)">CUSTOM4 (Q)</option> + <option value="CUSTOM4 (R)">CUSTOM4 (R)</option> + <option value="CUSTOM4 (S)">CUSTOM4 (S)</option> + <option value="CUSTOM4 (T)">CUSTOM4 (T)</option> + <option value="CUSTOM4 (V)">CUSTOM4 (V)</option> + <option value="CUSTOM4 (W)">CUSTOM4 (W)</option> + <option value="CUSTOM4 (Y)">CUSTOM4 (Y)</option> + <option value="CUSTOM5 (A)">CUSTOM5 (A)</option> + <option value="CUSTOM5 (C)">CUSTOM5 (C)</option> + <option value="CUSTOM5 (C-term)">CUSTOM5 (C-term)</option> + <option value="CUSTOM5 (D)">CUSTOM5 (D)</option> + <option value="CUSTOM5 (E)">CUSTOM5 (E)</option> + <option value="CUSTOM5 (F)">CUSTOM5 (F)</option> + <option value="CUSTOM5 (G)">CUSTOM5 (G)</option> + <option value="CUSTOM5 (H)">CUSTOM5 (H)</option> + <option value="CUSTOM5 (I)">CUSTOM5 (I)</option> + <option value="CUSTOM5 (K)">CUSTOM5 (K)</option> + <option value="CUSTOM5 (L)">CUSTOM5 (L)</option> + <option value="CUSTOM5 (M)">CUSTOM5 (M)</option> + <option value="CUSTOM5 (N)">CUSTOM5 (N)</option> + <option value="CUSTOM5 (N-term)">CUSTOM5 (N-term)</option> + <option value="CUSTOM5 (P)">CUSTOM5 (P)</option> + <option value="CUSTOM5 (Q)">CUSTOM5 (Q)</option> + <option value="CUSTOM5 (R)">CUSTOM5 (R)</option> + <option value="CUSTOM5 (S)">CUSTOM5 (S)</option> + <option value="CUSTOM5 (T)">CUSTOM5 (T)</option> + <option value="CUSTOM5 (V)">CUSTOM5 (V)</option> + <option value="CUSTOM5 (W)">CUSTOM5 (W)</option> + <option value="CUSTOM5 (Y)">CUSTOM5 (Y)</option> + <option value="CUSTOM6 (A)">CUSTOM6 (A)</option> + <option value="CUSTOM6 (C)">CUSTOM6 (C)</option> + <option value="CUSTOM6 (C-term)">CUSTOM6 (C-term)</option> + <option value="CUSTOM6 (D)">CUSTOM6 (D)</option> + <option value="CUSTOM6 (E)">CUSTOM6 (E)</option> + <option value="CUSTOM6 (F)">CUSTOM6 (F)</option> + <option value="CUSTOM6 (G)">CUSTOM6 (G)</option> + <option value="CUSTOM6 (H)">CUSTOM6 (H)</option> + <option value="CUSTOM6 (I)">CUSTOM6 (I)</option> + <option value="CUSTOM6 (K)">CUSTOM6 (K)</option> + <option value="CUSTOM6 (L)">CUSTOM6 (L)</option> + <option value="CUSTOM6 (M)">CUSTOM6 (M)</option> + <option value="CUSTOM6 (N)">CUSTOM6 (N)</option> + <option value="CUSTOM6 (N-term)">CUSTOM6 (N-term)</option> + <option value="CUSTOM6 (P)">CUSTOM6 (P)</option> + <option value="CUSTOM6 (Q)">CUSTOM6 (Q)</option> + <option value="CUSTOM6 (R)">CUSTOM6 (R)</option> + <option value="CUSTOM6 (S)">CUSTOM6 (S)</option> + <option value="CUSTOM6 (T)">CUSTOM6 (T)</option> + <option value="CUSTOM6 (V)">CUSTOM6 (V)</option> + <option value="CUSTOM6 (W)">CUSTOM6 (W)</option> + <option value="CUSTOM6 (Y)">CUSTOM6 (Y)</option> + <option value="CUSTOM7 (A)">CUSTOM7 (A)</option> + <option value="CUSTOM7 (C)">CUSTOM7 (C)</option> + <option value="CUSTOM7 (C-term)">CUSTOM7 (C-term)</option> + <option value="CUSTOM7 (D)">CUSTOM7 (D)</option> + <option value="CUSTOM7 (E)">CUSTOM7 (E)</option> + <option value="CUSTOM7 (F)">CUSTOM7 (F)</option> + <option value="CUSTOM7 (G)">CUSTOM7 (G)</option> + <option value="CUSTOM7 (H)">CUSTOM7 (H)</option> + <option value="CUSTOM7 (I)">CUSTOM7 (I)</option> + <option value="CUSTOM7 (K)">CUSTOM7 (K)</option> + <option value="CUSTOM7 (L)">CUSTOM7 (L)</option> + <option value="CUSTOM7 (M)">CUSTOM7 (M)</option> + <option value="CUSTOM7 (N)">CUSTOM7 (N)</option> + <option value="CUSTOM7 (N-term)">CUSTOM7 (N-term)</option> + <option value="CUSTOM7 (P)">CUSTOM7 (P)</option> + <option value="CUSTOM7 (Q)">CUSTOM7 (Q)</option> + <option value="CUSTOM7 (R)">CUSTOM7 (R)</option> + <option value="CUSTOM7 (S)">CUSTOM7 (S)</option> + <option value="CUSTOM7 (T)">CUSTOM7 (T)</option> + <option value="CUSTOM7 (V)">CUSTOM7 (V)</option> + <option value="CUSTOM7 (W)">CUSTOM7 (W)</option> + <option value="CUSTOM7 (Y)">CUSTOM7 (Y)</option> + <option value="CUSTOM8 (A)">CUSTOM8 (A)</option> + <option value="CUSTOM8 (C)">CUSTOM8 (C)</option> + <option value="CUSTOM8 (C-term)">CUSTOM8 (C-term)</option> + <option value="CUSTOM8 (D)">CUSTOM8 (D)</option> + <option value="CUSTOM8 (E)">CUSTOM8 (E)</option> + <option value="CUSTOM8 (F)">CUSTOM8 (F)</option> + <option value="CUSTOM8 (G)">CUSTOM8 (G)</option> + <option value="CUSTOM8 (H)">CUSTOM8 (H)</option> + <option value="CUSTOM8 (I)">CUSTOM8 (I)</option> + <option value="CUSTOM8 (K)">CUSTOM8 (K)</option> + <option value="CUSTOM8 (L)">CUSTOM8 (L)</option> + <option value="CUSTOM8 (M)">CUSTOM8 (M)</option> + <option value="CUSTOM8 (N)">CUSTOM8 (N)</option> + <option value="CUSTOM8 (N-term)">CUSTOM8 (N-term)</option> + <option value="CUSTOM8 (P)">CUSTOM8 (P)</option> + <option value="CUSTOM8 (Q)">CUSTOM8 (Q)</option> + <option value="CUSTOM8 (R)">CUSTOM8 (R)</option> + <option value="CUSTOM8 (S)">CUSTOM8 (S)</option> + <option value="CUSTOM8 (T)">CUSTOM8 (T)</option> + <option value="CUSTOM8 (V)">CUSTOM8 (V)</option> + <option value="CUSTOM8 (W)">CUSTOM8 (W)</option> + <option value="CUSTOM8 (Y)">CUSTOM8 (Y)</option> + <option value="CUSTOM9 (A)">CUSTOM9 (A)</option> + <option value="CUSTOM9 (C)">CUSTOM9 (C)</option> + <option value="CUSTOM9 (C-term)">CUSTOM9 (C-term)</option> + <option value="CUSTOM9 (D)">CUSTOM9 (D)</option> + <option value="CUSTOM9 (E)">CUSTOM9 (E)</option> + <option value="CUSTOM9 (F)">CUSTOM9 (F)</option> + <option value="CUSTOM9 (G)">CUSTOM9 (G)</option> + <option value="CUSTOM9 (H)">CUSTOM9 (H)</option> + <option value="CUSTOM9 (I)">CUSTOM9 (I)</option> + <option value="CUSTOM9 (K)">CUSTOM9 (K)</option> + <option value="CUSTOM9 (L)">CUSTOM9 (L)</option> + <option value="CUSTOM9 (M)">CUSTOM9 (M)</option> + <option value="CUSTOM9 (N)">CUSTOM9 (N)</option> + <option value="CUSTOM9 (N-term)">CUSTOM9 (N-term)</option> + <option value="CUSTOM9 (P)">CUSTOM9 (P)</option> + <option value="CUSTOM9 (Q)">CUSTOM9 (Q)</option> + <option value="CUSTOM9 (R)">CUSTOM9 (R)</option> + <option value="CUSTOM9 (S)">CUSTOM9 (S)</option> + <option value="CUSTOM9 (T)">CUSTOM9 (T)</option> + <option value="CUSTOM9 (V)">CUSTOM9 (V)</option> + <option value="CUSTOM9 (W)">CUSTOM9 (W)</option> + <option value="CUSTOM9 (Y)">CUSTOM9 (Y)</option> <option value="Can-FP-biotin (S)">Can-FP-biotin (S)</option> <option value="Can-FP-biotin (T)">Can-FP-biotin (T)</option> <option value="Can-FP-biotin (Y)">Can-FP-biotin (Y)</option> @@ -1950,6 +3119,7 @@ <option value="Carbamidomethyl (N-term)">Carbamidomethyl (N-term)</option> <option value="Carbamidomethyl (S)">Carbamidomethyl (S)</option> <option value="Carbamidomethyl (T)">Carbamidomethyl (T)</option> + <option value="Carbamidomethyl (U)">Carbamidomethyl (U)</option> <option value="Carbamidomethyl (Y)">Carbamidomethyl (Y)</option> <option value="CarbamidomethylDTT (C)">CarbamidomethylDTT (C)</option> <option value="Carbamyl (C)">Carbamyl (C)</option> @@ -1967,9 +3137,11 @@ <option value="Carboxy (W)">Carboxy (W)</option> <option value="Carboxyethyl (H)">Carboxyethyl (H)</option> <option value="Carboxyethyl (K)">Carboxyethyl (K)</option> + <option value="Carboxyethylpyrrole (K)">Carboxyethylpyrrole (K)</option> <option value="Carboxymethyl (C)">Carboxymethyl (C)</option> <option value="Carboxymethyl (K)">Carboxymethyl (K)</option> <option value="Carboxymethyl (N-term)">Carboxymethyl (N-term)</option> + <option value="Carboxymethyl (U)">Carboxymethyl (U)</option> <option value="Carboxymethyl (W)">Carboxymethyl (W)</option> <option value="Carboxymethyl:13C(2) (C)">Carboxymethyl:13C(2) (C)</option> <option value="CarboxymethylDMAP (N-term)">CarboxymethylDMAP (N-term)</option> @@ -1983,6 +3155,7 @@ <option value="Cation:Cu[I] (C-term)">Cation:Cu[I] (C-term)</option> <option value="Cation:Cu[I] (D)">Cation:Cu[I] (D)</option> <option value="Cation:Cu[I] (E)">Cation:Cu[I] (E)</option> + <option value="Cation:Cu[I] (H)">Cation:Cu[I] (H)</option> <option value="Cation:Fe[II] (C-term)">Cation:Fe[II] (C-term)</option> <option value="Cation:Fe[II] (D)">Cation:Fe[II] (D)</option> <option value="Cation:Fe[II] (E)">Cation:Fe[II] (E)</option> @@ -2004,6 +3177,7 @@ <option value="Cation:Zn[II] (C-term)">Cation:Zn[II] (C-term)</option> <option value="Cation:Zn[II] (D)">Cation:Zn[II] (D)</option> <option value="Cation:Zn[II] (E)">Cation:Zn[II] (E)</option> + <option value="Cation:Zn[II] (H)">Cation:Zn[II] (H)</option> <option value="Chlorination (Y)">Chlorination (Y)</option> <option value="Chlorpyrifos (S)">Chlorpyrifos (S)</option> <option value="Chlorpyrifos (T)">Chlorpyrifos (T)</option> @@ -2035,6 +3209,7 @@ <option value="Cys->Arg (C)">Cys->Arg (C)</option> <option value="Cys->Asn (C)">Cys->Asn (C)</option> <option value="Cys->Asp (C)">Cys->Asp (C)</option> + <option value="Cys->CamSec (C)">Cys->CamSec (C)</option> <option value="Cys->Dha (C)">Cys->Dha (C)</option> <option value="Cys->Gln (C)">Cys->Gln (C)</option> <option value="Cys->Glu (C)">Cys->Glu (C)</option> @@ -2045,6 +3220,8 @@ <option value="Cys->Oxoalanine (C)">Cys->Oxoalanine (C)</option> <option value="Cys->Phe (C)">Cys->Phe (C)</option> <option value="Cys->Pro (C)">Cys->Pro (C)</option> + <option value="Cys->SecNEM (C)">Cys->SecNEM (C)</option> + <option value="Cys->SecNEM:2H(5) (C)">Cys->SecNEM:2H(5) (C)</option> <option value="Cys->Ser (C)">Cys->Ser (C)</option> <option value="Cys->Thr (C)">Cys->Thr (C)</option> <option value="Cys->Trp (C)">Cys->Trp (C)</option> @@ -2137,7 +3314,7 @@ <option value="Delta:H(6)C(3)O(1) (H)">Delta:H(6)C(3)O(1) (H)</option> <option value="Delta:H(6)C(3)O(1) (K)">Delta:H(6)C(3)O(1) (K)</option> <option value="Delta:H(6)C(6)O(1) (K)">Delta:H(6)C(6)O(1) (K)</option> - <option value="Delta:H(8)C(6)O(1) (L)">Delta:H(8)C(6)O(1) (L)</option> + <option value="Delta:H(8)C(6)O(1) (K)">Delta:H(8)C(6)O(1) (K)</option> <option value="Delta:H(8)C(6)O(2) (K)">Delta:H(8)C(6)O(2) (K)</option> <option value="Delta:Hg(1) (C)">Delta:Hg(1) (C)</option> <option value="Delta:S(-1)Se(1) (C)">Delta:S(-1)Se(1) (C)</option> @@ -2147,6 +3324,7 @@ <option value="Deoxy (S)">Deoxy (S)</option> <option value="Deoxy (T)">Deoxy (T)</option> <option value="Deoxyhypusine (K)">Deoxyhypusine (K)</option> + <option value="Deoxyhypusine (Q)">Deoxyhypusine (Q)</option> <option value="Dethiomethyl (M)">Dethiomethyl (M)</option> <option value="DiART6plex (K)">DiART6plex (K)</option> <option value="DiART6plex (N-term)">DiART6plex (N-term)</option> @@ -2210,10 +3388,16 @@ <option value="Dimethyl (N)">Dimethyl (N)</option> <option value="Dimethyl (N-term)">Dimethyl (N-term)</option> <option value="Dimethyl (R)">Dimethyl (R)</option> + <option value="Dimethyl:2H(2)13C (K)">Dimethyl:2H(2)13C (K)</option> + <option value="Dimethyl:2H(2)13C (N)">Dimethyl:2H(2)13C (N)</option> + <option value="Dimethyl:2H(2)13C (N-term)">Dimethyl:2H(2)13C (N-term)</option> + <option value="Dimethyl:2H(2)13C (R)">Dimethyl:2H(2)13C (R)</option> <option value="Dimethyl:2H(4) (K)">Dimethyl:2H(4) (K)</option> <option value="Dimethyl:2H(4) (N-term)">Dimethyl:2H(4) (N-term)</option> + <option value="Dimethyl:2H(4) (R)">Dimethyl:2H(4) (R)</option> <option value="Dimethyl:2H(4)13C(2) (K)">Dimethyl:2H(4)13C(2) (K)</option> <option value="Dimethyl:2H(4)13C(2) (N-term)">Dimethyl:2H(4)13C(2) (N-term)</option> + <option value="Dimethyl:2H(4)13C(2) (R)">Dimethyl:2H(4)13C(2) (R)</option> <option value="Dimethyl:2H(6) (K)">Dimethyl:2H(6) (K)</option> <option value="Dimethyl:2H(6) (N-term)">Dimethyl:2H(6) (N-term)</option> <option value="Dimethyl:2H(6) (R)">Dimethyl:2H(6) (R)</option> @@ -2229,6 +3413,7 @@ <option value="Dioxidation (M)">Dioxidation (M)</option> <option value="Dioxidation (P)">Dioxidation (P)</option> <option value="Dioxidation (R)">Dioxidation (R)</option> + <option value="Dioxidation (U)">Dioxidation (U)</option> <option value="Dioxidation (W)">Dioxidation (W)</option> <option value="Dioxidation (Y)">Dioxidation (Y)</option> <option value="Diphthamide (H)">Diphthamide (H)</option> @@ -2296,6 +3481,7 @@ <option value="FTC (S)">FTC (S)</option> <option value="Farnesyl (C)">Farnesyl (C)</option> <option value="Fluorescein (C)">Fluorescein (C)</option> + <option value="Fluorescein-tyramine (Y)">Fluorescein-tyramine (Y)</option> <option value="Fluoro (A)">Fluoro (A)</option> <option value="Fluoro (F)">Fluoro (F)</option> <option value="Fluoro (W)">Fluoro (W)</option> @@ -2306,6 +3492,7 @@ <option value="Formyl (T)">Formyl (T)</option> <option value="Furan (Y)">Furan (Y)</option> <option value="G-H1 (R)">G-H1 (R)</option> + <option value="GEE (Q)">GEE (Q)</option> <option value="GG (C)">GG (C)</option> <option value="GG (K)">GG (K)</option> <option value="GG (S)">GG (S)</option> @@ -2320,6 +3507,7 @@ <option value="GIST-Quat:2H(9) (K)">GIST-Quat:2H(9) (K)</option> <option value="GIST-Quat:2H(9) (N-term)">GIST-Quat:2H(9) (N-term)</option> <option value="Galactosyl (K)">Galactosyl (K)</option> + <option value="Galactosyl (N-term)">Galactosyl (N-term)</option> <option value="GeranylGeranyl (C)">GeranylGeranyl (C)</option> <option value="Gln->Ala (Q)">Gln->Ala (Q)</option> <option value="Gln->Arg (Q)">Gln->Arg (Q)</option> @@ -2360,13 +3548,16 @@ <option value="Glu->Val (E)">Glu->Val (E)</option> <option value="Glu->Xle (E)">Glu->Xle (E)</option> <option value="Glu->pyro-Glu (N-term E)">Glu->pyro-Glu (N-term E)</option> + <option value="Glu->pyro-Glu+Methyl (N-term E)">Glu->pyro-Glu+Methyl (N-term E)</option> + <option value="Glu->pyro-Glu+Methyl (N-term E)">Glu->pyro-Glu+Methyl (N-term E)</option> + <option value="Glu->pyro-Glu+Methyl:2H(2)13C (N-term E)">Glu->pyro-Glu+Methyl:2H(2)13C (N-term E)</option> + <option value="Glu->pyro-Glu+Methyl:2H(2)13C(1) (N-term E)">Glu->pyro-Glu+Methyl:2H(2)13C(1) (N-term E)</option> <option value="GluGlu (E)">GluGlu (E)</option> <option value="GluGluGlu (E)">GluGluGlu (E)</option> <option value="GluGluGluGlu (E)">GluGluGluGlu (E)</option> - <option value="Gluconoylation (K)">Gluconoylation (K)</option> - <option value="Gluconoylation (N-term)">Gluconoylation (N-term)</option> <option value="Glucosylgalactosyl (K)">Glucosylgalactosyl (K)</option> <option value="Glucuronyl (S)">Glucuronyl (S)</option> + <option value="Glucuronyl (T)">Glucuronyl (T)</option> <option value="Glutathione (C)">Glutathione (C)</option> <option value="Gly (K)">Gly (K)</option> <option value="Gly (S)">Gly (S)</option> @@ -2436,48 +3627,353 @@ <option value="Hex (T)">Hex (T)</option> <option value="Hex (W)">Hex (W)</option> <option value="Hex (Y)">Hex (Y)</option> + <option value="Hex(1)HexA(1) (S)">Hex(1)HexA(1) (S)</option> + <option value="Hex(1)HexA(1) (T)">Hex(1)HexA(1) (T)</option> + <option value="Hex(1)HexA(1)HexNAc(1) (S)">Hex(1)HexA(1)HexNAc(1) (S)</option> + <option value="Hex(1)HexA(1)HexNAc(1) (T)">Hex(1)HexA(1)HexNAc(1) (T)</option> + <option value="Hex(1)HexA(1)HexNAc(2) (S)">Hex(1)HexA(1)HexNAc(2) (S)</option> + <option value="Hex(1)HexA(1)HexNAc(2) (T)">Hex(1)HexA(1)HexNAc(2) (T)</option> + <option value="Hex(1)HexNAc(1) (N)">Hex(1)HexNAc(1) (N)</option> + <option value="Hex(1)HexNAc(1) (S)">Hex(1)HexNAc(1) (S)</option> + <option value="Hex(1)HexNAc(1) (T)">Hex(1)HexNAc(1) (T)</option> + <option value="Hex(1)HexNAc(1)Kdn(1)Sulf(1) (S)">Hex(1)HexNAc(1)Kdn(1)Sulf(1) (S)</option> + <option value="Hex(1)HexNAc(1)Kdn(1)Sulf(1) (T)">Hex(1)HexNAc(1)Kdn(1)Sulf(1) (T)</option> <option value="Hex(1)HexNAc(1)NeuAc(1) (N)">Hex(1)HexNAc(1)NeuAc(1) (N)</option> <option value="Hex(1)HexNAc(1)NeuAc(1) (S)">Hex(1)HexNAc(1)NeuAc(1) (S)</option> <option value="Hex(1)HexNAc(1)NeuAc(1) (T)">Hex(1)HexNAc(1)NeuAc(1) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1)Ac(1) (S)">Hex(1)HexNAc(1)NeuAc(1)Ac(1) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1)Ac(1) (T)">Hex(1)HexNAc(1)NeuAc(1)Ac(1) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (S)">Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (T)">Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (S)">Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (T)">Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (T)</option> <option value="Hex(1)HexNAc(1)NeuAc(2) (N)">Hex(1)HexNAc(1)NeuAc(2) (N)</option> <option value="Hex(1)HexNAc(1)NeuAc(2) (S)">Hex(1)HexNAc(1)NeuAc(2) (S)</option> <option value="Hex(1)HexNAc(1)NeuAc(2) (T)">Hex(1)HexNAc(1)NeuAc(2) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2)Ac(1) (S)">Hex(1)HexNAc(1)NeuAc(2)Ac(1) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2)Ac(1) (T)">Hex(1)HexNAc(1)NeuAc(2)Ac(1) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2)Ac(2) (S)">Hex(1)HexNAc(1)NeuAc(2)Ac(2) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(2)Ac(2) (T)">Hex(1)HexNAc(1)NeuAc(2)Ac(2) (T)</option> + <option value="Hex(1)HexNAc(1)NeuAc(3) (S)">Hex(1)HexNAc(1)NeuAc(3) (S)</option> + <option value="Hex(1)HexNAc(1)NeuAc(3) (T)">Hex(1)HexNAc(1)NeuAc(3) (T)</option> + <option value="Hex(1)HexNAc(1)NeuGc(1) (S)">Hex(1)HexNAc(1)NeuGc(1) (S)</option> + <option value="Hex(1)HexNAc(1)NeuGc(1) (T)">Hex(1)HexNAc(1)NeuGc(1) (T)</option> + <option value="Hex(1)HexNAc(1)NeuGc(2) (S)">Hex(1)HexNAc(1)NeuGc(2) (S)</option> + <option value="Hex(1)HexNAc(1)NeuGc(2) (T)">Hex(1)HexNAc(1)NeuGc(2) (T)</option> + <option value="Hex(1)HexNAc(1)NeuGc(3) (S)">Hex(1)HexNAc(1)NeuGc(3) (S)</option> + <option value="Hex(1)HexNAc(1)NeuGc(3) (T)">Hex(1)HexNAc(1)NeuGc(3) (T)</option> + <option value="Hex(1)HexNAc(1)NeuGc(4) (S)">Hex(1)HexNAc(1)NeuGc(4) (S)</option> + <option value="Hex(1)HexNAc(1)NeuGc(4) (T)">Hex(1)HexNAc(1)NeuGc(4) (T)</option> + <option value="Hex(1)HexNAc(1)NeuGc(5) (S)">Hex(1)HexNAc(1)NeuGc(5) (S)</option> + <option value="Hex(1)HexNAc(1)NeuGc(5) (T)">Hex(1)HexNAc(1)NeuGc(5) (T)</option> + <option value="Hex(1)HexNAc(1)Phos(1) (S)">Hex(1)HexNAc(1)Phos(1) (S)</option> + <option value="Hex(1)HexNAc(1)Phos(1) (T)">Hex(1)HexNAc(1)Phos(1) (T)</option> + <option value="Hex(1)HexNAc(1)Sulf(1) (S)">Hex(1)HexNAc(1)Sulf(1) (S)</option> + <option value="Hex(1)HexNAc(1)Sulf(1) (T)">Hex(1)HexNAc(1)Sulf(1) (T)</option> <option value="Hex(1)HexNAc(1)dHex(1) (N)">Hex(1)HexNAc(1)dHex(1) (N)</option> + <option value="Hex(1)HexNAc(1)dHex(1) (S)">Hex(1)HexNAc(1)dHex(1) (S)</option> + <option value="Hex(1)HexNAc(1)dHex(1) (T)">Hex(1)HexNAc(1)dHex(1) (T)</option> + <option value="Hex(1)HexNAc(1)dHex(1)Me(1) (S)">Hex(1)HexNAc(1)dHex(1)Me(1) (S)</option> + <option value="Hex(1)HexNAc(1)dHex(1)Me(1) (T)">Hex(1)HexNAc(1)dHex(1)Me(1) (T)</option> + <option value="Hex(1)HexNAc(1)dHex(1)Me(2) (S)">Hex(1)HexNAc(1)dHex(1)Me(2) (S)</option> + <option value="Hex(1)HexNAc(1)dHex(1)Me(2) (T)">Hex(1)HexNAc(1)dHex(1)Me(2) (T)</option> <option value="Hex(1)HexNAc(2) (N)">Hex(1)HexNAc(2) (N)</option> + <option value="Hex(1)HexNAc(2) (S)">Hex(1)HexNAc(2) (S)</option> + <option value="Hex(1)HexNAc(2) (T)">Hex(1)HexNAc(2) (T)</option> + <option value="Hex(1)HexNAc(2)NeuAc(1) (S)">Hex(1)HexNAc(2)NeuAc(1) (S)</option> + <option value="Hex(1)HexNAc(2)NeuAc(1) (T)">Hex(1)HexNAc(2)NeuAc(1) (T)</option> + <option value="Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S)">Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S)</option> + <option value="Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T)">Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T)</option> + <option value="Hex(1)HexNAc(2)NeuAc(2) (S)">Hex(1)HexNAc(2)NeuAc(2) (S)</option> + <option value="Hex(1)HexNAc(2)NeuAc(2) (T)">Hex(1)HexNAc(2)NeuAc(2) (T)</option> + <option value="Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (S)">Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (S)</option> + <option value="Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (T)">Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (T)</option> + <option value="Hex(1)HexNAc(2)NeuGc(1) (S)">Hex(1)HexNAc(2)NeuGc(1) (S)</option> + <option value="Hex(1)HexNAc(2)NeuGc(1) (T)">Hex(1)HexNAc(2)NeuGc(1) (T)</option> <option value="Hex(1)HexNAc(2)Pent(1) (N)">Hex(1)HexNAc(2)Pent(1) (N)</option> + <option value="Hex(1)HexNAc(2)Sulf(1) (S)">Hex(1)HexNAc(2)Sulf(1) (S)</option> + <option value="Hex(1)HexNAc(2)Sulf(1) (T)">Hex(1)HexNAc(2)Sulf(1) (T)</option> <option value="Hex(1)HexNAc(2)dHex(1) (N)">Hex(1)HexNAc(2)dHex(1) (N)</option> + <option value="Hex(1)HexNAc(2)dHex(1) (S)">Hex(1)HexNAc(2)dHex(1) (S)</option> + <option value="Hex(1)HexNAc(2)dHex(1) (T)">Hex(1)HexNAc(2)dHex(1) (T)</option> <option value="Hex(1)HexNAc(2)dHex(1)Pent(1) (N)">Hex(1)HexNAc(2)dHex(1)Pent(1) (N)</option> <option value="Hex(1)HexNAc(2)dHex(2) (N)">Hex(1)HexNAc(2)dHex(2) (N)</option> + <option value="Hex(1)HexNAc(2)dHex(2) (S)">Hex(1)HexNAc(2)dHex(2) (S)</option> + <option value="Hex(1)HexNAc(2)dHex(2) (T)">Hex(1)HexNAc(2)dHex(2) (T)</option> + <option value="Hex(1)HexNAc(3) (S)">Hex(1)HexNAc(3) (S)</option> + <option value="Hex(1)HexNAc(3) (T)">Hex(1)HexNAc(3) (T)</option> + <option value="Hex(1)HexNAc(3)NeuAc(1) (S)">Hex(1)HexNAc(3)NeuAc(1) (S)</option> + <option value="Hex(1)HexNAc(3)NeuAc(1) (T)">Hex(1)HexNAc(3)NeuAc(1) (T)</option> + <option value="Hex(1)HexNAc(3)NeuAc(2) (S)">Hex(1)HexNAc(3)NeuAc(2) (S)</option> + <option value="Hex(1)HexNAc(3)NeuAc(2) (T)">Hex(1)HexNAc(3)NeuAc(2) (T)</option> + <option value="Hex(1)HexNAc(3)NeuGc(1) (S)">Hex(1)HexNAc(3)NeuGc(1) (S)</option> + <option value="Hex(1)HexNAc(3)NeuGc(1) (T)">Hex(1)HexNAc(3)NeuGc(1) (T)</option> + <option value="Hex(1)HexNAc(3)Sulf(1) (S)">Hex(1)HexNAc(3)Sulf(1) (S)</option> + <option value="Hex(1)HexNAc(3)Sulf(1) (T)">Hex(1)HexNAc(3)Sulf(1) (T)</option> + <option value="Hex(1)NeuAc(1) (S)">Hex(1)NeuAc(1) (S)</option> + <option value="Hex(1)NeuAc(1) (T)">Hex(1)NeuAc(1) (T)</option> + <option value="Hex(1)NeuAc(1)Pent(1) (S)">Hex(1)NeuAc(1)Pent(1) (S)</option> + <option value="Hex(1)NeuAc(1)Pent(1) (T)">Hex(1)NeuAc(1)Pent(1) (T)</option> + <option value="Hex(1)NeuGc(1) (S)">Hex(1)NeuGc(1) (S)</option> + <option value="Hex(1)NeuGc(1) (T)">Hex(1)NeuGc(1) (T)</option> + <option value="Hex(1)Pent(1) (S)">Hex(1)Pent(1) (S)</option> + <option value="Hex(1)Pent(1) (T)">Hex(1)Pent(1) (T)</option> + <option value="Hex(1)Pent(2) (S)">Hex(1)Pent(2) (S)</option> + <option value="Hex(1)Pent(2) (T)">Hex(1)Pent(2) (T)</option> + <option value="Hex(10)Phos(3) (S)">Hex(10)Phos(3) (S)</option> + <option value="Hex(10)Phos(3) (T)">Hex(10)Phos(3) (T)</option> <option value="Hex(2) (K)">Hex(2) (K)</option> <option value="Hex(2) (R)">Hex(2) (R)</option> + <option value="Hex(2)HexA(1)HexNAc(1)Sulf(1) (S)">Hex(2)HexA(1)HexNAc(1)Sulf(1) (S)</option> + <option value="Hex(2)HexA(1)HexNAc(1)Sulf(1) (T)">Hex(2)HexA(1)HexNAc(1)Sulf(1) (T)</option> + <option value="Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1) (S)">Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1) (S)</option> + <option value="Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1) (T)">Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1) (T)</option> + <option value="Hex(2)HexA(1)Pent(1)Sulf(1) (S)">Hex(2)HexA(1)Pent(1)Sulf(1) (S)</option> + <option value="Hex(2)HexA(1)Pent(1)Sulf(1) (T)">Hex(2)HexA(1)Pent(1)Sulf(1) (T)</option> + <option value="Hex(2)HexNAc(1) (S)">Hex(2)HexNAc(1) (S)</option> + <option value="Hex(2)HexNAc(1) (T)">Hex(2)HexNAc(1) (T)</option> + <option value="Hex(2)HexNAc(1)Me(1) (S)">Hex(2)HexNAc(1)Me(1) (S)</option> + <option value="Hex(2)HexNAc(1)Me(1) (T)">Hex(2)HexNAc(1)Me(1) (T)</option> + <option value="Hex(2)HexNAc(1)NeuGc(1) (S)">Hex(2)HexNAc(1)NeuGc(1) (S)</option> + <option value="Hex(2)HexNAc(1)NeuGc(1) (T)">Hex(2)HexNAc(1)NeuGc(1) (T)</option> + <option value="Hex(2)HexNAc(1)NeuGc(2) (S)">Hex(2)HexNAc(1)NeuGc(2) (S)</option> + <option value="Hex(2)HexNAc(1)NeuGc(2) (T)">Hex(2)HexNAc(1)NeuGc(2) (T)</option> + <option value="Hex(2)HexNAc(1)NeuGc(3) (S)">Hex(2)HexNAc(1)NeuGc(3) (S)</option> + <option value="Hex(2)HexNAc(1)NeuGc(3) (T)">Hex(2)HexNAc(1)NeuGc(3) (T)</option> + <option value="Hex(2)HexNAc(1)NeuGc(4) (S)">Hex(2)HexNAc(1)NeuGc(4) (S)</option> + <option value="Hex(2)HexNAc(1)NeuGc(4) (T)">Hex(2)HexNAc(1)NeuGc(4) (T)</option> + <option value="Hex(2)HexNAc(1)Sulf(1) (S)">Hex(2)HexNAc(1)Sulf(1) (S)</option> + <option value="Hex(2)HexNAc(1)Sulf(1) (T)">Hex(2)HexNAc(1)Sulf(1) (T)</option> <option value="Hex(2)HexNAc(2) (N)">Hex(2)HexNAc(2) (N)</option> + <option value="Hex(2)HexNAc(2) (S)">Hex(2)HexNAc(2) (S)</option> + <option value="Hex(2)HexNAc(2) (T)">Hex(2)HexNAc(2) (T)</option> + <option value="Hex(2)HexNAc(2)NeuAc(1) (N)">Hex(2)HexNAc(2)NeuAc(1) (N)</option> + <option value="Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S)">Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S)</option> + <option value="Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T)">Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T)</option> + <option value="Hex(2)HexNAc(2)NeuAc(2) (S)">Hex(2)HexNAc(2)NeuAc(2) (S)</option> + <option value="Hex(2)HexNAc(2)NeuAc(2) (T)">Hex(2)HexNAc(2)NeuAc(2) (T)</option> + <option value="Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (S)">Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (S)</option> + <option value="Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (T)">Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (T)</option> + <option value="Hex(2)HexNAc(2)NeuGc(1) (S)">Hex(2)HexNAc(2)NeuGc(1) (S)</option> + <option value="Hex(2)HexNAc(2)NeuGc(1) (T)">Hex(2)HexNAc(2)NeuGc(1) (T)</option> <option value="Hex(2)HexNAc(2)Pent(1) (N)">Hex(2)HexNAc(2)Pent(1) (N)</option> + <option value="Hex(2)HexNAc(2)Sulf(1) (S)">Hex(2)HexNAc(2)Sulf(1) (S)</option> + <option value="Hex(2)HexNAc(2)Sulf(1) (T)">Hex(2)HexNAc(2)Sulf(1) (T)</option> <option value="Hex(2)HexNAc(2)dHex(1) (N)">Hex(2)HexNAc(2)dHex(1) (N)</option> + <option value="Hex(2)HexNAc(2)dHex(1) (S)">Hex(2)HexNAc(2)dHex(1) (S)</option> + <option value="Hex(2)HexNAc(2)dHex(1) (T)">Hex(2)HexNAc(2)dHex(1) (T)</option> + <option value="Hex(2)HexNAc(3) (S)">Hex(2)HexNAc(3) (S)</option> + <option value="Hex(2)HexNAc(3) (T)">Hex(2)HexNAc(3) (T)</option> + <option value="Hex(2)HexNAc(3)NeuAc(1)NeuGc(1) (S)">Hex(2)HexNAc(3)NeuAc(1)NeuGc(1) (S)</option> + <option value="Hex(2)HexNAc(3)NeuAc(1)NeuGc(1) (T)">Hex(2)HexNAc(3)NeuAc(1)NeuGc(1) (T)</option> + <option value="Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (S)">Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (S)</option> + <option value="Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (T)">Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (T)</option> + <option value="Hex(2)HexNAc(3)NeuAc(2) (S)">Hex(2)HexNAc(3)NeuAc(2) (S)</option> + <option value="Hex(2)HexNAc(3)NeuAc(2) (T)">Hex(2)HexNAc(3)NeuAc(2) 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(S)</option> + <option value="Hex(6)HexNAc(4) (T)">Hex(6)HexNAc(4) (T)</option> + <option value="Hex(6)HexNAc(4)Me(3) (N)">Hex(6)HexNAc(4)Me(3) (N)</option> + <option value="Hex(6)HexNAc(4)Me(3)Pent(1) (N)">Hex(6)HexNAc(4)Me(3)Pent(1) (N)</option> + <option value="Hex(6)HexNAc(5) (N)">Hex(6)HexNAc(5) (N)</option> + <option value="Hex(6)Phos(1) (S)">Hex(6)Phos(1) (S)</option> + <option value="Hex(6)Phos(1) (T)">Hex(6)Phos(1) (T)</option> + <option value="Hex(6)Phos(3) (S)">Hex(6)Phos(3) (S)</option> + <option value="Hex(6)Phos(3) (T)">Hex(6)Phos(3) (T)</option> + <option value="Hex(7)HexNAc(1) (N)">Hex(7)HexNAc(1) (N)</option> + <option value="Hex(7)HexNAc(2) (N)">Hex(7)HexNAc(2) (N)</option> + <option value="Hex(7)HexNAc(2)Phos(1) (N)">Hex(7)HexNAc(2)Phos(1) (N)</option> + <option value="Hex(7)HexNAc(2)Phos(2) (N)">Hex(7)HexNAc(2)Phos(2) (N)</option> + <option value="Hex(7)HexNAc(3) (N)">Hex(7)HexNAc(3) (N)</option> + <option value="Hex(7)HexNAc(3)Phos(1) (N)">Hex(7)HexNAc(3)Phos(1) (N)</option> + <option value="Hex(7)HexNAc(4) (N)">Hex(7)HexNAc(4) (N)</option> + <option value="Hex(7)Phos(3) (S)">Hex(7)Phos(3) (S)</option> + <option value="Hex(7)Phos(3) (T)">Hex(7)Phos(3) (T)</option> + <option value="Hex(8)HexNAc(1) (N)">Hex(8)HexNAc(1) (N)</option> + <option value="Hex(8)HexNAc(2) (N)">Hex(8)HexNAc(2) (N)</option> + <option value="Hex(8)Phos(3) (S)">Hex(8)Phos(3) (S)</option> + <option value="Hex(8)Phos(3) (T)">Hex(8)Phos(3) (T)</option> + <option value="Hex(9)HexNAc(2) (N)">Hex(9)HexNAc(2) (N)</option> + <option value="Hex(9)Phos(3) (S)">Hex(9)Phos(3) (S)</option> + <option value="Hex(9)Phos(3) (T)">Hex(9)Phos(3) (T)</option> <option value="HexN (K)">HexN (K)</option> <option value="HexN (N)">HexN (N)</option> + <option value="HexN (S)">HexN (S)</option> <option value="HexN (T)">HexN (T)</option> <option value="HexN (W)">HexN (W)</option> <option value="HexNAc (N)">HexNAc (N)</option> <option value="HexNAc (S)">HexNAc (S)</option> <option value="HexNAc (T)">HexNAc (T)</option> + <option value="HexNAc(1)Kdn(2) (S)">HexNAc(1)Kdn(2) (S)</option> + <option value="HexNAc(1)Kdn(2) (T)">HexNAc(1)Kdn(2) (T)</option> + <option value="HexNAc(1)NeuAc(1) (S)">HexNAc(1)NeuAc(1) (S)</option> + <option value="HexNAc(1)NeuAc(1) (T)">HexNAc(1)NeuAc(1) (T)</option> + <option value="HexNAc(1)NeuGc(1) (S)">HexNAc(1)NeuGc(1) (S)</option> + <option value="HexNAc(1)NeuGc(1) (T)">HexNAc(1)NeuGc(1) (T)</option> + <option value="HexNAc(1)NeuGc(2) (S)">HexNAc(1)NeuGc(2) (S)</option> + <option value="HexNAc(1)NeuGc(2) (T)">HexNAc(1)NeuGc(2) (T)</option> <option value="HexNAc(1)dHex(1) (N)">HexNAc(1)dHex(1) (N)</option> + <option value="HexNAc(1)dHex(1) (S)">HexNAc(1)dHex(1) (S)</option> + <option value="HexNAc(1)dHex(1) (T)">HexNAc(1)dHex(1) (T)</option> <option value="HexNAc(1)dHex(2) (N)">HexNAc(1)dHex(2) (N)</option> <option value="HexNAc(2) (N)">HexNAc(2) (N)</option> + <option value="HexNAc(2) (S)">HexNAc(2) (S)</option> + <option value="HexNAc(2) (T)">HexNAc(2) (T)</option> + <option value="HexNAc(2)NeuAc(1) (S)">HexNAc(2)NeuAc(1) (S)</option> + <option value="HexNAc(2)NeuAc(1) (T)">HexNAc(2)NeuAc(1) (T)</option> + <option value="HexNAc(2)NeuAc(1)Sulf(1) (S)">HexNAc(2)NeuAc(1)Sulf(1) (S)</option> + <option value="HexNAc(2)NeuAc(1)Sulf(1) (T)">HexNAc(2)NeuAc(1)Sulf(1) (T)</option> + <option value="HexNAc(2)NeuGc(1) (S)">HexNAc(2)NeuGc(1) (S)</option> + <option value="HexNAc(2)NeuGc(1) (T)">HexNAc(2)NeuGc(1) (T)</option> <option value="HexNAc(2)dHex(1) (N)">HexNAc(2)dHex(1) (N)</option> <option value="HexNAc(2)dHex(2) (N)">HexNAc(2)dHex(2) (N)</option> + <option value="HexNAc(3) (S)">HexNAc(3) (S)</option> + <option value="HexNAc(3) (T)">HexNAc(3) (T)</option> + <option value="HexNAc(3)Sulf(1) (S)">HexNAc(3)Sulf(1) (S)</option> + <option value="HexNAc(3)Sulf(1) (T)">HexNAc(3)Sulf(1) (T)</option> + <option value="HexNAc(4) (S)">HexNAc(4) (S)</option> + <option value="HexNAc(4) (T)">HexNAc(4) (T)</option> + <option value="HexNAc(5) (S)">HexNAc(5) (S)</option> + <option value="HexNAc(5) (T)">HexNAc(5) (T)</option> <option value="His->Ala (H)">His->Ala (H)</option> <option value="His->Arg (H)">His->Arg (H)</option> <option value="His->Asn (H)">His->Asn (H)</option> @@ -2506,6 +4002,7 @@ <option value="HydroxymethylOP (K)">HydroxymethylOP (K)</option> <option value="Hydroxytrimethyl (K)">Hydroxytrimethyl (K)</option> <option value="Hypusine (K)">Hypusine (K)</option> + <option value="IASD (C)">IASD (C)</option> <option value="IBTP (C)">IBTP (C)</option> <option value="ICAT-C (C)">ICAT-C (C)</option> <option value="ICAT-C:13C(9) (C)">ICAT-C:13C(9) (C)</option> @@ -2560,8 +4057,11 @@ <option value="LG-pyrrole (K)">LG-pyrrole (K)</option> <option value="LG-pyrrole (N-term)">LG-pyrrole (N-term)</option> <option value="LRGG (K)">LRGG (K)</option> + <option value="LRGG+dimethyl (K)">LRGG+dimethyl (K)</option> + <option value="LRGG+methyl (K)">LRGG+methyl (K)</option> <option value="Label:13C(1)2H(3) (M)">Label:13C(1)2H(3) (M)</option> <option value="Label:13C(1)2H(3)+Oxidation (M)">Label:13C(1)2H(3)+Oxidation (M)</option> + <option value="Label:13C(2)15N(2) (K)">Label:13C(2)15N(2) (K)</option> <option value="Label:13C(3) (A)">Label:13C(3) (A)</option> <option value="Label:13C(3)15N(1) (A)">Label:13C(3)15N(1) (A)</option> <option value="Label:13C(4) (M)">Label:13C(4) (M)</option> @@ -2591,7 +4091,6 @@ <option value="Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2) (R)">Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2) (R)</option> <option value="Label:13C(6)15N(4)+Methyl (R)">Label:13C(6)15N(4)+Methyl (R)</option> <option value="Label:13C(6)15N(4)+Methyl:2H(3)13C(1) (R)">Label:13C(6)15N(4)+Methyl:2H(3)13C(1) (R)</option> - <option value="Label:13C(8)15N(2) (R)">Label:13C(8)15N(2) (R)</option> <option value="Label:13C(9) (F)">Label:13C(9) (F)</option> <option value="Label:13C(9) (Y)">Label:13C(9) (Y)</option> <option value="Label:13C(9)+Phospho (Y)">Label:13C(9)+Phospho (Y)</option> @@ -2715,13 +4214,29 @@ <option value="Methyl+Deamidated (Q)">Methyl+Deamidated (Q)</option> <option value="Methyl-PEO12-Maleimide (C)">Methyl-PEO12-Maleimide (C)</option> <option value="Methyl:2H(2) (K)">Methyl:2H(2) (K)</option> - <option value="Methyl:2H(3) (C-term)">Methyl:2H(3) (C-term)</option> + <option value="Methyl:2H(2) (N-term)">Methyl:2H(2) (N-term)</option> + <option value="Methyl:2H(2)13C (C)">Methyl:2H(2)13C (C)</option> + <option value="Methyl:2H(2)13C (C-term)">Methyl:2H(2)13C (C-term)</option> + <option value="Methyl:2H(2)13C (D)">Methyl:2H(2)13C (D)</option> + <option value="Methyl:2H(2)13C (E)">Methyl:2H(2)13C (E)</option> + <option value="Methyl:2H(2)13C (H)">Methyl:2H(2)13C (H)</option> + <option value="Methyl:2H(2)13C (I)">Methyl:2H(2)13C (I)</option> + <option value="Methyl:2H(2)13C (K)">Methyl:2H(2)13C (K)</option> + <option value="Methyl:2H(2)13C (L)">Methyl:2H(2)13C (L)</option> + <option value="Methyl:2H(2)13C (N)">Methyl:2H(2)13C (N)</option> + <option value="Methyl:2H(2)13C (N-term)">Methyl:2H(2)13C (N-term)</option> + <option value="Methyl:2H(2)13C (Q)">Methyl:2H(2)13C (Q)</option> + <option value="Methyl:2H(2)13C (R)">Methyl:2H(2)13C (R)</option> + <option value="Methyl:2H(2)13C (S)">Methyl:2H(2)13C (S)</option> + <option value="Methyl:2H(2)13C (T)">Methyl:2H(2)13C (T)</option> <option value="Methyl:2H(3) (D)">Methyl:2H(3) (D)</option> <option value="Methyl:2H(3) (E)">Methyl:2H(3) (E)</option> <option value="Methyl:2H(3) (K)">Methyl:2H(3) (K)</option> <option value="Methyl:2H(3) (R)">Methyl:2H(3) (R)</option> + <option value="Methyl:2H(3) (X)">Methyl:2H(3) (X)</option> <option value="Methyl:2H(3)+Acetyl:2H(3) (K)">Methyl:2H(3)+Acetyl:2H(3) (K)</option> <option value="Methyl:2H(3)13C(1) (K)">Methyl:2H(3)13C(1) (K)</option> + <option value="Methyl:2H(3)13C(1) (N-term)">Methyl:2H(3)13C(1) (N-term)</option> <option value="Methyl:2H(3)13C(1) (R)">Methyl:2H(3)13C(1) (R)</option> <option value="Methylamine (S)">Methylamine (S)</option> <option value="Methylamine (T)">Methylamine (T)</option> @@ -2738,6 +4253,7 @@ <option value="Molybdopterin (C)">Molybdopterin (C)</option> <option value="MolybdopterinGD (C)">MolybdopterinGD (C)</option> <option value="MolybdopterinGD (D)">MolybdopterinGD (D)</option> + <option value="MolybdopterinGD (U)">MolybdopterinGD (U)</option> <option value="MolybdopterinGD+Delta:S(-1)Se(1) (C)">MolybdopterinGD+Delta:S(-1)Se(1) (C)</option> <option value="MurNAc (A)">MurNAc (A)</option> <option value="Myristoyl (C)">Myristoyl (C)</option> @@ -2769,6 +4285,8 @@ <option value="NO_SMX_SEMD (C)">NO_SMX_SEMD (C)</option> <option value="NO_SMX_SIMD (C)">NO_SMX_SIMD (C)</option> <option value="NO_SMX_SMCT (C)">NO_SMX_SMCT (C)</option> + <option value="NP40 (N-term)">NP40 (N-term)</option> + <option value="NQIGG (K)">NQIGG (K)</option> <option value="Nethylmaleimide (C)">Nethylmaleimide (C)</option> <option value="Nethylmaleimide+water (C)">Nethylmaleimide+water (C)</option> <option value="Nethylmaleimide+water (K)">Nethylmaleimide+water (K)</option> @@ -2818,6 +4336,7 @@ <option value="Oxidation (N)">Oxidation (N)</option> <option value="Oxidation (P)">Oxidation (P)</option> <option value="Oxidation (R)">Oxidation (R)</option> + <option value="Oxidation (U)">Oxidation (U)</option> <option value="Oxidation (W)">Oxidation (W)</option> <option value="Oxidation (Y)">Oxidation (Y)</option> <option value="Oxidation+NEM (C)">Oxidation+NEM (C)</option> @@ -2837,6 +4356,8 @@ <option value="Palmitoyl (K)">Palmitoyl (K)</option> <option value="Palmitoyl (S)">Palmitoyl (S)</option> <option value="Palmitoyl (T)">Palmitoyl (T)</option> + <option value="Pentose (S)">Pentose (S)</option> + <option value="Pentose (T)">Pentose (T)</option> <option value="Pentylamine (Q)">Pentylamine (Q)</option> <option value="Phe->Ala (F)">Phe->Ala (F)</option> <option value="Phe->Arg (F)">Phe->Arg (F)</option> @@ -2868,6 +4389,10 @@ <option value="Phospho (T)">Phospho (T)</option> <option value="Phospho (Y)">Phospho (Y)</option> <option value="PhosphoHex (S)">PhosphoHex (S)</option> + <option value="PhosphoHex (T)">PhosphoHex (T)</option> + <option value="PhosphoHex(2) (N)">PhosphoHex(2) (N)</option> + <option value="PhosphoHex(2) (S)">PhosphoHex(2) (S)</option> + <option value="PhosphoHex(2) (T)">PhosphoHex(2) (T)</option> <option value="PhosphoHexNAc (S)">PhosphoHexNAc (S)</option> <option value="PhosphoHexNAc (T)">PhosphoHexNAc (T)</option> <option value="PhosphoUridine (H)">PhosphoUridine (H)</option> @@ -2931,6 +4456,9 @@ <option value="Propiophenone (S)">Propiophenone (S)</option> <option value="Propiophenone (T)">Propiophenone (T)</option> <option value="Propiophenone (W)">Propiophenone (W)</option> + <option value="Propyl (C-term)">Propyl (C-term)</option> + <option value="Propyl (D)">Propyl (D)</option> + <option value="Propyl (E)">Propyl (E)</option> <option value="Propyl (K)">Propyl (K)</option> <option value="Propyl (N-term)">Propyl (N-term)</option> <option value="Propyl:2H(6) (K)">Propyl:2H(6) (K)</option> @@ -2952,6 +4480,8 @@ <option value="QTGG (K)">QTGG (K)</option> <option value="Quinone (W)">Quinone (W)</option> <option value="Quinone (Y)">Quinone (Y)</option> + <option value="RNPXL (N-term K)">RNPXL (N-term K)</option> + <option value="RNPXL (N-term R)">RNPXL (N-term R)</option> <option value="RNPXlink1 (C)">RNPXlink1 (C)</option> <option value="RNPXlink2 (F)">RNPXlink2 (F)</option> <option value="RNPXlink2 (K)">RNPXlink2 (K)</option> @@ -2973,9 +4503,6 @@ <option value="SUMO3549 (K)">SUMO3549 (K)</option> <option value="Saligenin (H)">Saligenin (H)</option> <option value="Saligenin (K)">Saligenin (K)</option> - <option value="SecCarbamidomethyl (C)">SecCarbamidomethyl (C)</option> - <option value="SecNEM (C)">SecNEM (C)</option> - <option value="SecNEM:2H(5) (C)">SecNEM:2H(5) (C)</option> <option value="Ser->Ala (S)">Ser->Ala (S)</option> <option value="Ser->Arg (S)">Ser->Arg (S)</option> <option value="Ser->Asn (S)">Ser->Asn (S)</option> @@ -3044,7 +4571,7 @@ <option value="Thiadiazole (C)">Thiadiazole (C)</option> <option value="Thiazolidine (N-term C)">Thiazolidine (N-term C)</option> <option value="Thioacyl (K)">Thioacyl (K)</option> - <option value="Thioacyl (N-term)">Thioacyl (N-term)</option> + <option value="Thioacyl (X)">Thioacyl (X)</option> <option value="Thiophos-S-S-biotin (S)">Thiophos-S-S-biotin (S)</option> <option value="Thiophos-S-S-biotin (T)">Thiophos-S-S-biotin (T)</option> <option value="Thiophos-S-S-biotin (Y)">Thiophos-S-S-biotin (Y)</option> @@ -3082,6 +4609,9 @@ <option value="Trioxidation (C)">Trioxidation (C)</option> <option value="Trioxidation (W)">Trioxidation (W)</option> <option value="Trioxidation (Y)">Trioxidation (Y)</option> + <option value="Tris (N)">Tris (N)</option> + <option value="Triton (C-term)">Triton (C-term)</option> + <option value="Triton (N-term)">Triton (N-term)</option> <option value="Trp->Ala (W)">Trp->Ala (W)</option> <option value="Trp->Arg (W)">Trp->Arg (W)</option> <option value="Trp->Asn (W)">Trp->Asn (W)</option> @@ -3103,6 +4633,8 @@ <option value="Trp->Tyr (W)">Trp->Tyr (W)</option> <option value="Trp->Val (W)">Trp->Val (W)</option> <option value="Trp->Xle (W)">Trp->Xle (W)</option> + <option value="Tween20 (N-term)">Tween20 (N-term)</option> + <option value="Tween80 (C-term)">Tween80 (C-term)</option> <option value="Tyr->Ala (Y)">Tyr->Ala (Y)</option> <option value="Tyr->Arg (Y)">Tyr->Arg (Y)</option> <option value="Tyr->Asn (Y)">Tyr->Asn (Y)</option> @@ -3194,6 +4726,7 @@ <option value="Xlink:DMP-de (K)">Xlink:DMP-de (K)</option> <option value="Xlink:DMP-s (K)">Xlink:DMP-s (K)</option> <option value="Xlink:DSS (K)">Xlink:DSS (K)</option> + <option value="Xlink:DSS-NH2 (K)">Xlink:DSS-NH2 (K)</option> <option value="Xlink:DST (K)">Xlink:DST (K)</option> <option value="Xlink:DTSSP (K)">Xlink:DTSSP (K)</option> <option value="Xlink:EGS (K)">Xlink:EGS (K)</option> @@ -3206,6 +4739,8 @@ <option value="azole (C)">azole (C)</option> <option value="azole (S)">azole (S)</option> <option value="benzylguanidine (K)">benzylguanidine (K)</option> + <option value="beta FNA (C)">beta FNA (C)</option> + <option value="beta FNA (K)">beta FNA (K)</option> <option value="biotinAcrolein298 (C)">biotinAcrolein298 (C)</option> <option value="biotinAcrolein298 (H)">biotinAcrolein298 (H)</option> <option value="biotinAcrolein298 (K)">biotinAcrolein298 (K)</option> @@ -3223,21 +4758,358 @@ <option value="dHex (T)">dHex (T)</option> <option value="dHex(1)Hex(1) (S)">dHex(1)Hex(1) (S)</option> <option value="dHex(1)Hex(1) (T)">dHex(1)Hex(1) (T)</option> + <option value="dHex(1)Hex(1)HexA(1)HexNAc(3) (S)">dHex(1)Hex(1)HexA(1)HexNAc(3) (S)</option> + <option value="dHex(1)Hex(1)HexA(1)HexNAc(3) (T)">dHex(1)Hex(1)HexA(1)HexNAc(3) (T)</option> + <option value="dHex(1)Hex(1)HexNAc(1)Kdn(1) (S)">dHex(1)Hex(1)HexNAc(1)Kdn(1) (S)</option> + <option value="dHex(1)Hex(1)HexNAc(1)Kdn(1) (T)">dHex(1)Hex(1)HexNAc(1)Kdn(1) 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<option value="dHex(2)Hex(3)HexNAc(3) (T)">dHex(2)Hex(3)HexNAc(3) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(3)NeuAc(1) (S)">dHex(2)Hex(3)HexNAc(3)NeuAc(1) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(3)NeuAc(1) (T)">dHex(2)Hex(3)HexNAc(3)NeuAc(1) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(3)NeuAc(2) (S)">dHex(2)Hex(3)HexNAc(3)NeuAc(2) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(3)NeuAc(2) (T)">dHex(2)Hex(3)HexNAc(3)NeuAc(2) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(3)NeuGc(1) (S)">dHex(2)Hex(3)HexNAc(3)NeuGc(1) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(3)NeuGc(1) (T)">dHex(2)Hex(3)HexNAc(3)NeuGc(1) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(3)Pent(1) (N)">dHex(2)Hex(3)HexNAc(3)Pent(1) (N)</option> + <option value="dHex(2)Hex(3)HexNAc(3)Pent(2) (N)">dHex(2)Hex(3)HexNAc(3)Pent(2) (N)</option> + <option value="dHex(2)Hex(3)HexNAc(4) (N)">dHex(2)Hex(3)HexNAc(4) (N)</option> + <option value="dHex(2)Hex(3)HexNAc(4) (S)">dHex(2)Hex(3)HexNAc(4) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(4) (T)">dHex(2)Hex(3)HexNAc(4) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(4)Pent(1) (N)">dHex(2)Hex(3)HexNAc(4)Pent(1) (N)</option> + <option value="dHex(2)Hex(3)HexNAc(4)Pent(2) (N)">dHex(2)Hex(3)HexNAc(4)Pent(2) (N)</option> + <option value="dHex(2)Hex(3)HexNAc(5) (S)">dHex(2)Hex(3)HexNAc(5) (S)</option> + <option value="dHex(2)Hex(3)HexNAc(5) (T)">dHex(2)Hex(3)HexNAc(5) (T)</option> + <option value="dHex(2)Hex(3)HexNAc(6) (N)">dHex(2)Hex(3)HexNAc(6) (N)</option> + <option value="dHex(2)Hex(4) (S)">dHex(2)Hex(4) (S)</option> + <option value="dHex(2)Hex(4) (T)">dHex(2)Hex(4) (T)</option> + <option value="dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (S)">dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (S)</option> + <option value="dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (T)">dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (T)</option> + <option value="dHex(2)Hex(4)HexNAc(1) (S)">dHex(2)Hex(4)HexNAc(1) (S)</option> + <option value="dHex(2)Hex(4)HexNAc(1) (T)">dHex(2)Hex(4)HexNAc(1) (T)</option> + <option value="dHex(2)Hex(4)HexNAc(2) (N)">dHex(2)Hex(4)HexNAc(2) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(2) (S)">dHex(2)Hex(4)HexNAc(2) (S)</option> + <option value="dHex(2)Hex(4)HexNAc(2) (T)">dHex(2)Hex(4)HexNAc(2) (T)</option> + <option value="dHex(2)Hex(4)HexNAc(3) (N)">dHex(2)Hex(4)HexNAc(3) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1) (N)">dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(3)Pent(1) (N)">dHex(2)Hex(4)HexNAc(3)Pent(1) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(4) (N)">dHex(2)Hex(4)HexNAc(4) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(4) (S)">dHex(2)Hex(4)HexNAc(4) (S)</option> + <option value="dHex(2)Hex(4)HexNAc(4) (T)">dHex(2)Hex(4)HexNAc(4) (T)</option> + <option value="dHex(2)Hex(4)HexNAc(4)Pent(1) (N)">dHex(2)Hex(4)HexNAc(4)Pent(1) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(4)Sulf(1) (N)">dHex(2)Hex(4)HexNAc(4)Sulf(1) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(5) (N)">dHex(2)Hex(4)HexNAc(5) (N)</option> + <option value="dHex(2)Hex(4)HexNAc(5) (S)">dHex(2)Hex(4)HexNAc(5) (S)</option> + <option value="dHex(2)Hex(4)HexNAc(5) (T)">dHex(2)Hex(4)HexNAc(5) (T)</option> + <option value="dHex(2)Hex(5)HexNAc(3)Pent(1) (N)">dHex(2)Hex(5)HexNAc(3)Pent(1) (N)</option> + <option value="dHex(2)Hex(5)HexNAc(4) (N)">dHex(2)Hex(5)HexNAc(4) (N)</option> + <option value="dHex(2)HexNAc(2)Kdn(1) (S)">dHex(2)HexNAc(2)Kdn(1) (S)</option> + <option value="dHex(2)HexNAc(2)Kdn(1) (T)">dHex(2)HexNAc(2)Kdn(1) (T)</option> + <option value="dHex(2)HexNAc(5) (S)">dHex(2)HexNAc(5) (S)</option> + <option value="dHex(2)HexNAc(5) (T)">dHex(2)HexNAc(5) (T)</option> + <option value="dHex(2)HexNAc(7) (S)">dHex(2)HexNAc(7) (S)</option> + <option value="dHex(2)HexNAc(7) (T)">dHex(2)HexNAc(7) (T)</option> + <option value="dHex(3)Hex(1)HexNAc(2)Kdn(1) (S)">dHex(3)Hex(1)HexNAc(2)Kdn(1) (S)</option> + <option value="dHex(3)Hex(1)HexNAc(2)Kdn(1) (T)">dHex(3)Hex(1)HexNAc(2)Kdn(1) (T)</option> + <option value="dHex(3)Hex(1)HexNAc(3)Kdn(1) (S)">dHex(3)Hex(1)HexNAc(3)Kdn(1) (S)</option> + <option value="dHex(3)Hex(1)HexNAc(3)Kdn(1) (T)">dHex(3)Hex(1)HexNAc(3)Kdn(1) (T)</option> + <option value="dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (S)">dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (S)</option> + <option value="dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (T)">dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (T)</option> + <option value="dHex(3)Hex(2)HexNAc(2) (S)">dHex(3)Hex(2)HexNAc(2) (S)</option> + <option value="dHex(3)Hex(2)HexNAc(2) (T)">dHex(3)Hex(2)HexNAc(2) (T)</option> + <option value="dHex(3)Hex(2)HexNAc(2)Kdn(1) (S)">dHex(3)Hex(2)HexNAc(2)Kdn(1) (S)</option> + <option value="dHex(3)Hex(2)HexNAc(2)Kdn(1) (T)">dHex(3)Hex(2)HexNAc(2)Kdn(1) (T)</option> + <option value="dHex(3)Hex(2)HexNAc(3) (S)">dHex(3)Hex(2)HexNAc(3) (S)</option> + <option value="dHex(3)Hex(2)HexNAc(3) (T)">dHex(3)Hex(2)HexNAc(3) (T)</option> + <option value="dHex(3)Hex(2)HexNAc(3)Kdn(1) (S)">dHex(3)Hex(2)HexNAc(3)Kdn(1) (S)</option> + <option value="dHex(3)Hex(2)HexNAc(3)Kdn(1) (T)">dHex(3)Hex(2)HexNAc(3)Kdn(1) (T)</option> + <option value="dHex(3)Hex(2)HexNAc(4) (S)">dHex(3)Hex(2)HexNAc(4) (S)</option> + <option value="dHex(3)Hex(2)HexNAc(4) (T)">dHex(3)Hex(2)HexNAc(4) (T)</option> + <option value="dHex(3)Hex(3)HexNAc(3) (S)">dHex(3)Hex(3)HexNAc(3) (S)</option> + <option value="dHex(3)Hex(3)HexNAc(3) (T)">dHex(3)Hex(3)HexNAc(3) (T)</option> + <option value="dHex(3)Hex(3)HexNAc(3)NeuAc(1) (S)">dHex(3)Hex(3)HexNAc(3)NeuAc(1) (S)</option> + <option value="dHex(3)Hex(3)HexNAc(3)NeuAc(1) (T)">dHex(3)Hex(3)HexNAc(3)NeuAc(1) (T)</option> + <option value="dHex(3)Hex(3)HexNAc(3)Pent(1) (N)">dHex(3)Hex(3)HexNAc(3)Pent(1) (N)</option> + <option value="dHex(3)Hex(3)HexNAc(4) (N)">dHex(3)Hex(3)HexNAc(4) (N)</option> + <option value="dHex(3)Hex(3)HexNAc(4)Pent(1) (N)">dHex(3)Hex(3)HexNAc(4)Pent(1) (N)</option> + <option value="dHex(3)Hex(4)HexNAc(4) (N)">dHex(3)Hex(4)HexNAc(4) (N)</option> + <option value="dHex(3)Hex(4)HexNAc(4) (S)">dHex(3)Hex(4)HexNAc(4) (S)</option> + <option value="dHex(3)Hex(4)HexNAc(4) (T)">dHex(3)Hex(4)HexNAc(4) (T)</option> + <option value="dHex(3)Hex(4)HexNAc(4)Sulf(1) (N)">dHex(3)Hex(4)HexNAc(4)Sulf(1) (N)</option> + <option value="dHex(3)HexNAc(3)Kdn(1) (S)">dHex(3)HexNAc(3)Kdn(1) (S)</option> + <option value="dHex(3)HexNAc(3)Kdn(1) (T)">dHex(3)HexNAc(3)Kdn(1) (T)</option> + <option value="dHex(4)Hex(1)HexNAc(1)Kdn(2) (S)">dHex(4)Hex(1)HexNAc(1)Kdn(2) (S)</option> + <option value="dHex(4)Hex(1)HexNAc(1)Kdn(2) (T)">dHex(4)Hex(1)HexNAc(1)Kdn(2) (T)</option> + <option value="dHex(4)Hex(1)HexNAc(2)Kdn(1) (S)">dHex(4)Hex(1)HexNAc(2)Kdn(1) (S)</option> + <option value="dHex(4)Hex(1)HexNAc(2)Kdn(1) (T)">dHex(4)Hex(1)HexNAc(2)Kdn(1) (T)</option> + <option value="dHex(4)Hex(1)HexNAc(3)Kdn(1) (S)">dHex(4)Hex(1)HexNAc(3)Kdn(1) (S)</option> + <option value="dHex(4)Hex(1)HexNAc(3)Kdn(1) (T)">dHex(4)Hex(1)HexNAc(3)Kdn(1) (T)</option> + <option value="dHex(4)Hex(2)HexNAc(2)Kdn(1) (S)">dHex(4)Hex(2)HexNAc(2)Kdn(1) (S)</option> + <option value="dHex(4)Hex(2)HexNAc(2)Kdn(1) (T)">dHex(4)Hex(2)HexNAc(2)Kdn(1) (T)</option> + <option value="dHex(4)Hex(2)HexNAc(3) (S)">dHex(4)Hex(2)HexNAc(3) (S)</option> + <option value="dHex(4)Hex(2)HexNAc(3) (T)">dHex(4)Hex(2)HexNAc(3) (T)</option> + <option value="dHex(4)Hex(3)HexNAc(3) (S)">dHex(4)Hex(3)HexNAc(3) (S)</option> + <option value="dHex(4)Hex(3)HexNAc(3) (T)">dHex(4)Hex(3)HexNAc(3) (T)</option> + <option value="dHex(4)HexNAc(3)Kdn(1) (S)">dHex(4)HexNAc(3)Kdn(1) (S)</option> + <option value="dHex(4)HexNAc(3)Kdn(1) (T)">dHex(4)HexNAc(3)Kdn(1) (T)</option> <option value="dNIC (K)">dNIC (K)</option> <option value="dNIC (N-term)">dNIC (N-term)</option> <option value="dichlorination (C)">dichlorination (C)</option> @@ -3317,48 +5189,51 @@ <option value="pupylation (K)">pupylation (K)</option> <option value="pyrophospho (S)">pyrophospho (S)</option> <option value="pyrophospho (T)">pyrophospho (T)</option> + <option value="s-GlcNAc (S)">s-GlcNAc (S)</option> + <option value="s-GlcNAc (T)">s-GlcNAc (T)</option> + <option value="spermidine (Q)">spermidine (Q)</option> + <option value="spermine (Q)">spermine (Q)</option> <option value="sulfo+amino (Y)">sulfo+amino (Y)</option> <option value="thioacylPA (K)">thioacylPA (K)</option> <option value="trifluoro (L)">trifluoro (L)</option> </param> </repeat> - <param name="param_missed_cleavages" type="integer" value="1" label="Number of possible cleavage sites missed by the enzyme" help="(-missed_cleavages) "/> <param name="param_minimum_fragment_mz" type="float" value="150.0" label="Minimum fragment mz" help="(-minimum_fragment_mz) "/> - <param name="param_cleavage_site" type="select" optional="False" value="Trypsin" label="The enzyme used for peptide digestion" help="(-cleavage_site) "> - <option value="unspecific cleavage">unspecific cleavage</option> + <param name="param_enzyme" type="select" optional="False" value="Trypsin" label="The enzyme used for peptide digestion" help="(-enzyme) "> + <option value="CNBr">CNBr</option> + <option value="Formic_acid">Formic_acid</option> + <option value="TrypChymo">TrypChymo</option> + <option value="PepsinA">PepsinA</option> + <option value="2-iodobenzoate">2-iodobenzoate</option> + <option value="Asp-N">Asp-N</option> + <option value="Arg-C">Arg-C</option> + <option value="V8-E">V8-E</option> + <option value="Lys-C">Lys-C</option> <option value="V8-DE">V8-DE</option> - <option value="Trypsin" selected="true">Trypsin</option> - <option value="Lys-C">Lys-C</option> - <option value="TrypChymo">TrypChymo</option> - <option value="Lys-C/P">Lys-C/P</option> + <option value="leukocyte elastase">leukocyte elastase</option> <option value="Asp-N_ambic">Asp-N_ambic</option> + <option value="glutamyl endopeptidase">glutamyl endopeptidase</option> + <option value="Chymotrypsin">Chymotrypsin</option> <option value="Trypsin/P">Trypsin/P</option> - <option value="Formic_acid">Formic_acid</option> - <option value="glutamyl endopeptidase">glutamyl endopeptidase</option> - <option value="V8-E">V8-E</option> - <option value="leukocyte elastase">leukocyte elastase</option> - <option value="Arg-C">Arg-C</option> - <option value="Chymotrypsin">Chymotrypsin</option> - <option value="CNBr">CNBr</option> - <option value="Asp-N">Asp-N</option> - <option value="2-iodobenzoate">2-iodobenzoate</option> - <option value="PepsinA">PepsinA</option> + <option value="Trypsin" selected="true">Trypsin</option> + <option value="unspecific cleavage">unspecific cleavage</option> + <option value="Lys-C/P">Lys-C/P</option> </param> + <param name="param_missed_cleavages" type="integer" value="1" label="Number of possible cleavage sites missed by the enzyme" help="(-missed_cleavages) "/> + <param name="param_semi_cleavage" display="radio" type="boolean" truevalue="-semi_cleavage" falsevalue="" checked="false" optional="True" label="Require only peptide end to have a valid cleavage site, not both" help="(-semi_cleavage) "/> <param name="param_output_results" display="radio" type="select" optional="False" value="all" label="Which hits should be reported" help="(-output_results) All, valid ones (passing the E-Value threshold), or stochastic (failing the threshold)"> <option value="all" selected="true">all</option> <option value="valid">valid</option> <option value="stochastic">stochastic</option> </param> - <param name="param_max_valid_expect" type="float" value="0.1" label="Maximal E-Value of a hit to be reported (only evaluated if 'output_result' is 'valid' or 'stochastic'" help="(-max_valid_expect) "/> - <param name="param_refinement" display="radio" type="boolean" truevalue="-refinement" falsevalue="" checked="false" optional="True" label="Enable the refinement" help="(-refinement) For most applications (especially when using FDR, PEP approaches) it is NOT recommended to set this flag"/> - <param name="param_use_noise_suppression" display="radio" type="boolean" truevalue="-use_noise_suppression" falsevalue="" checked="false" optional="True" label="Enable the use of the noise suppression routines" help="(-use_noise_suppression) "/> - <param name="param_semi_cleavage" display="radio" type="boolean" truevalue="-semi_cleavage" falsevalue="" checked="false" optional="True" label="If set, both termini must NOT follow the cutting rule" help="(-semi_cleavage) For most applications it is NOT recommended to set this flag"/> + <param name="param_max_valid_expect" type="float" value="0.1" label="Maximal E-Value of a hit to be reported (only evaluated if 'output_result' is 'valid' or 'stochastic')" help="(-max_valid_expect) "/> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out" format="idxml"/> + <data name="param_xml_out" format="xml"/> </outputs> <help>Annotates MS/MS spectra using X! Tandem.
--- a/datatypes_conf.xml Wed Mar 01 12:31:29 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,33 +0,0 @@ -<?xml version='1.0' encoding='UTF-8'?> -<datatypes> - <registration converters_path="lib/galaxy/datatypes/converters" display_path="display_applications"> - <datatype extension="mzxml" type="galaxy.datatypes.proteomics:MzXML" mimetype="application/xml"/> - <datatype extension="traml" type="galaxy.datatypes.proteomics:TraML" mimetype="application/xml"/> - <datatype extension="idxml" type="galaxy.datatypes.proteomics:IdXM" mimetype="application/xml"/> - <datatype extension="txt" type="galaxy.datatypes.data:Text"/> - <datatype extension="tabular" type="galaxy.datatypes.tabular:Tabular"/> - <datatype extension="txt" type="galaxy.datatypes.data:Text"/> - <datatype extension="fasta" type="galaxy.datatypes.sequence:Fasta"/> - <datatype extension="mgf" type="galaxy.datatypes.proteomics:Mgf"/> - <datatype extension="mzml" type="galaxy.datatypes.proteomics:MzML" mimetype="application/xml"/> - <datatype extension="trafoxml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml"/> - <datatype extension="traml" type="galaxy.datatypes.proteomics:TraML" mimetype="application/xml"/> - <datatype extension="msp" type="galaxy.datatypes.proteomics:Msp"/> - <datatype extension="html" type="galaxy.datatypes.text:Html" mimetype="text/html"/> - <datatype extension="tabular" type="galaxy.datatypes.tabular:Tabular"/> - <datatype extension="fasta" type="galaxy.datatypes.sequence:Fasta"/> - <datatype extension="tabular" type="galaxy.datatypes.tabular:Tabular"/> - <datatype extension="consensusxml" type="galaxy.datatypes.proteomics:ConsensusXML" mimetype="application/xml"/> - <datatype extension="xml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml"/> - <datatype extension="mzq" type="galaxy.datatypes.proteomics:MzQuantML" mimetype="application/xml"/> - <datatype extension="grid" type="galaxy.datatypes.data:Grid"/> - <datatype extension="pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml"/> - <datatype extension="png" type="galaxy.datatypes.images:Png" mimetype="image/png"/> - <datatype extension="qcml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml"/> - <datatype extension="featurexml" type="galaxy.datatypes.proteomics:FeatureXML" mimetype="application/xml"/> - <datatype extension="html" type="galaxy.datatypes.text:Html" mimetype="text/html"/> - <datatype extension="txt" type="galaxy.datatypes.data:Text"/> - <datatype extension="mzid" type="galaxy.datatypes.proteomics:MzIdentML" mimetype="application/xml"/> - <datatype extension="txt" type="galaxy.datatypes.data:Text"/> - </registration> -</datatypes>
--- a/filetypes.txt Wed Mar 01 12:31:29 2017 -0500 +++ b/filetypes.txt Wed Aug 09 09:18:43 2017 -0400 @@ -14,7 +14,7 @@ consensusXML consensusxml galaxy.datatypes.proteomics:ConsensusXML application/xml edta tabular galaxy.datatypes.tabular:Tabular featureXML featurexml galaxy.datatypes.proteomics:FeatureXML application/xml -idXML idxml galaxy.datatypes.proteomics:IdXM application/xml +idXML idxml galaxy.datatypes.proteomics:IdXML application/xml mzML mzml galaxy.datatypes.proteomics:MzML application/xml mzXML mzxml galaxy.datatypes.proteomics:MzXML application/xml pepXML pepxml galaxy.datatypes.proteomics:PepXml application/xml @@ -26,4 +26,4 @@ msp msp galaxy.datatypes.proteomics:Msp mzid mzid galaxy.datatypes.proteomics:MzIdentML application/xml png png galaxy.datatypes.images:Png image/png -mgf mgf galaxy.datatypes.proteomics:Mgf \ No newline at end of file +mgf mgf galaxy.datatypes.proteomics:Mgf
--- a/macros.xml Wed Mar 01 12:31:29 2017 -0500 +++ b/macros.xml Wed Aug 09 09:18:43 2017 -0400 @@ -2,7 +2,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="2.1">openms</requirement> + <requirement type="package" version="2.2">openms</requirement> <requirement type="package" version="15.12.15.2">xtandem</requirement> <requirement type="package" version="1.0">fido</requirement> <requirement type="package" version="2016.10.26">msgf_plus</requirement>
--- a/readme.md Wed Mar 01 12:31:29 2017 -0500 +++ b/readme.md Wed Aug 09 09:18:43 2017 -0400 @@ -14,15 +14,29 @@ Generating OpenMS wrappers ========================== - * install OpenMS (you can do this automatically through the Tool Shed) + * install OpenMS (you can do this automatically through Conda) * create a folder called CTD - * inside of your new installed openms/bin folder, execute the following command: + * if you installed openms as a binary in a specific directory, execute the following command in the `openms/bin` directory: ```bash for binary in `ls`; do ./$binary -write_ctd /PATH/TO/YOUR/CTD; done; ``` - * `MetaProSIP.ctd` includes a not supported character: To use it, search for `²` and replace it (e.g. with `^2`). + * if there is no binary release (e.g. as with version 2.2), download and unpack the Conda package, find the `bin` folder and create a list of the tools as follow: + + ```bash + ls >> tools.txt + ``` + + * search for the `bin` folder of your conda environment containing OpenMS and do: + + ```bash + while read p; do + ./PATH/TO/BIN/$p -write_ctd /PATH/TO/YOUR/CTD; + done <tools.txt + ``` + + * You should have all CTD files now. `MetaProSIP.ctd` includes a not supported character: To use it, search for `²` and replace it (e.g. with `^2`). * clone or install CTDopts @@ -39,10 +53,10 @@ * clone or install CTD2Galaxy ```bash - git clone https://github.com/blankclemens/CTD2Galaxy.git + git clone https://github.com/WorkflowConversion/CTD2Galaxy.git ``` - * If you have CTDopts and CTD2Galaxy installed you are ready to generate Galaxy Tools from CTD definitions. Change the following command according to your needs, especially the `/PATH/TO` parts. + * If you have CTDopts and CTD2Galaxy installed you are ready to generate Galaxy Tools from CTD definitions. Change the following command according to your needs, especially the `/PATH/TO` parts. The default files are provided in this repository. You might have to install `libxslt` and `lxml` to run it. ```bash python generator.py \ @@ -102,17 +116,32 @@ [...] ]]> ``` - * In `PeakPickerHiRes.xml`, the parameter `report_FWHM_unit` has to be put in quotation marks. Look for the following line + + * In `IDFileConverter.xml` the following is needed in the command section at the beginning (check your file to know what to copy where): - -algorithm:report_FWHM_unit $param_algorithm_report_FWHM_unit - - and change it to + ``` + <command><![CDATA[ - -algorithm:report_FWHM_unit "$param_algorithm_report_FWHM_unit" + ## check input file type + #set $in_type = $param_in.ext + + ## create the symlinks to set the proper file extension, since IDFileConverter uses them to choose how to handle the input files + ln -s '$param_in' 'param_in.${in_type}' && + + IDFileConverter - * In `FileConverter.xml` add `auto_format="true"` to the output, e.g.: + #if $param_in: + -in 'param_in.${in_type}' + #end if + + [...] + ]]> + ``` + + * In `IDFileConverter.xml` and `FileConverter.xml` add `auto_format="true"` to the output, e.g.: - <data name="param_out" metadata_source="param_in" auto_format="true"/> + - `<data name="param_out" auto_format="true"/>` + - `<data name="param_out" metadata_source="param_in" auto_format="true"/>` * To add an example test case to `DecoyDatabase.xml` add the following after the output section. If standard settings change you might have to adjust the options and/or the test files.
--- a/tool.conf Wed Mar 01 12:31:29 2017 -0500 +++ b/tool.conf Wed Aug 09 09:18:43 2017 -0400 @@ -6,13 +6,7 @@ <tool file="openms/RTModel.xml"/> <tool file="openms/RTPredict.xml"/> </section> - <section id="section-id-DEFAULT" name="DEFAULT"> - <tool file="openms/OpenSwathFileSplitter.xml"/> - <tool file="openms/OpenSwathMzMLFileCacher.xml"/> - </section> <section id="section-id-TargetedExperiments" name="Targeted Experiments"> - <tool file="openms/ConvertTraMLToTSV.xml"/> - <tool file="openms/ConvertTSVToTraML.xml"/> <tool file="openms/InclusionExclusionListCreator.xml"/> <tool file="openms/MRMMapper.xml"/> <tool file="openms/OpenSwathAnalyzer.xml"/> @@ -22,13 +16,17 @@ <tool file="openms/OpenSwathDecoyGenerator.xml"/> <tool file="openms/OpenSwathDIAPreScoring.xml"/> <tool file="openms/OpenSwathFeatureXMLToTSV.xml"/> + <tool file="openms/OpenSwathFileSplitter.xml"/> + <tool file="openms/OpenSwathMzMLFileCacher.xml"/> <tool file="openms/OpenSwathRewriteToFeatureXML.xml"/> <tool file="openms/OpenSwathRTNormalizer.xml"/> <tool file="openms/PrecursorIonSelector.xml"/> + <tool file="openms/TargetedFileConverter.xml"/> </section> <section id="section-id-Utilities" name="Utilities"> <tool file="openms/AccurateMassSearch.xml"/> <tool file="openms/CVInspector.xml"/> + <tool file="openms/DatabaseFilter.xml"/> <tool file="openms/DecoyDatabase.xml"/> <tool file="openms/DeMeanderize.xml"/> <tool file="openms/Digestor.xml"/> @@ -44,7 +42,6 @@ <tool file="openms/LabeledEval.xml"/> <tool file="openms/LowMemPeakPickerHiRes.xml"/> <tool file="openms/LowMemPeakPickerHiRes_RandomAccess.xml"/> - <tool file="openms/MapAlignmentEvaluation.xml"/> <tool file="openms/MassCalculator.xml"/> <tool file="openms/MetaboliteSpectralMatcher.xml"/> <tool file="openms/MetaProSIP.xml"/> @@ -62,12 +59,14 @@ <tool file="openms/QCMerger.xml"/> <tool file="openms/QCShrinker.xml"/> <tool file="openms/RNPxl.xml"/> + <tool file="openms/RNPxlSearch.xml"/> <tool file="openms/RNPxlXICFilter.xml"/> <tool file="openms/RTEvaluation.xml"/> <tool file="openms/SemanticValidator.xml"/> <tool file="openms/SequenceCoverageCalculator.xml"/> <tool file="openms/SimpleSearchEngine.xml"/> <tool file="openms/SpecLibCreator.xml"/> + <tool file="openms/SpectraSTSearchAdapter.xml"/> <tool file="openms/SvmTheoreticalSpectrumGeneratorTrainer.xml"/> <tool file="openms/TICCalculator.xml"/> <tool file="openms/TopPerc.xml"/> @@ -78,6 +77,7 @@ <tool file="openms/ConsensusMapNormalizer.xml"/> <tool file="openms/FeatureLinkerLabeled.xml"/> <tool file="openms/FeatureLinkerUnlabeled.xml"/> + <tool file="openms/FeatureLinkerUnlabeledKD.xml"/> <tool file="openms/FeatureLinkerUnlabeledQT.xml"/> <tool file="openms/MapRTTransformer.xml"/> </section> @@ -154,9 +154,7 @@ <tool file="openms/FeatureFinderMultiplex.xml"/> <tool file="openms/FeatureFinderSuperHirn.xml"/> <tool file="openms/IsobaricAnalyzer.xml"/> - <tool file="openms/ITRAQAnalyzer.xml"/> <tool file="openms/ProteinQuantifier.xml"/> <tool file="openms/ProteinResolver.xml"/> - <tool file="openms/TMTAnalyzer.xml"/> </section> </toolbox>