Mercurial > repos > galaxyp > package_morpheus_255
comparison tool_dependencies.xml @ 0:1beee9ed43fd draft default tip
planemo upload commit 9cae80c2ab1d6c933382cd8584e2d51f3c3d305b-dirty
author | galaxyp |
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date | Mon, 23 May 2016 09:48:21 -0400 |
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1 <?xml version="1.0"?> | |
2 <tool_dependency> | |
3 <package name="mono" version="4.0"> | |
4 <repository changeset_revision="4912e4d532cd" name="package_mono_4_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
5 </package> | |
6 <package name="morpheus" version="255"> | |
7 <install version="1.0"> | |
8 <actions> | |
9 <action type="download_by_url">https://github.com/cwenger/Morpheus/releases/download/r255/Morpheus_mzML_Mono.tar.gz</action> | |
10 <action type="set_environment_for_install"> | |
11 <repository changeset_revision="4912e4d532cd" name="package_mono_4_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
12 <package name="mono" version="4.0" /> | |
13 </repository> | |
14 </action> | |
15 <action type="move_directory_files"> | |
16 <source_directory>.</source_directory> | |
17 <destination_directory>$INSTALL_DIR/</destination_directory> | |
18 </action> | |
19 <action type="set_environment"> | |
20 <environment_variable action="set_to" name="MORPHEUS_PATH">$INSTALL_DIR</environment_variable> | |
21 <environment_variable action="prepend_to" name="PATH">$ENV[MONO_ROOT_PATH]/bin</environment_variable> | |
22 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[MONO_ROOT_PATH]/lib</environment_variable> | |
23 <environment_variable action="set_to" name="MONO_ROOT_PATH">$ENV[MONO_ROOT_PATH]</environment_variable> | |
24 </action> | |
25 </actions> | |
26 </install> | |
27 <readme> | |
28 Install Galaxy package application for Morpheus release 255 for use on linux | |
29 Must be executed with mono: | |
30 mono ${MORPHEUS_PATH}/morpheus_mzml_mono_cl.exe -d input.mzML -db searchDB.fasta | |
31 https://github.com/cwenger/Morpheus/ | |
32 </readme> | |
33 </package> | |
34 </tool_dependency> |