diff tool_dependencies.xml @ 0:1beee9ed43fd draft default tip

planemo upload commit 9cae80c2ab1d6c933382cd8584e2d51f3c3d305b-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon May 23 09:48:21 2016 -0400
@@ -0,0 +1,34 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="mono" version="4.0">
+       <repository changeset_revision="4912e4d532cd" name="package_mono_4_0" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="morpheus" version="255">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://github.com/cwenger/Morpheus/releases/download/r255/Morpheus_mzML_Mono.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="4912e4d532cd" name="package_mono_4_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
+                        <package name="mono" version="4.0" />
+                    </repository>
+                </action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR/</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="MORPHEUS_PATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$ENV[MONO_ROOT_PATH]/bin</environment_variable>
+                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[MONO_ROOT_PATH]/lib</environment_variable>
+                    <environment_variable action="set_to" name="MONO_ROOT_PATH">$ENV[MONO_ROOT_PATH]</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Install Galaxy package application for Morpheus release 255 for use on linux 
+            Must be executed with mono:
+            mono ${MORPHEUS_PATH}/morpheus_mzml_mono_cl.exe -d input.mzML -db searchDB.fasta
+            https://github.com/cwenger/Morpheus/
+        </readme>
+    </package>
+</tool_dependency>