Mercurial > repos > galaxyp > package_openms_1_11
comparison tool_dependencies.xml @ 3:c2722f62c7ad draft
Uploaded
| author | bgruening |
|---|---|
| date | Tue, 19 Nov 2013 18:26:39 -0500 |
| parents | 22f618a19f69 |
| children | b4b3c6103f36 |
comparison
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| 2:22f618a19f69 | 3:c2722f62c7ad |
|---|---|
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="libtool" version="2.4"> | 3 <package name="libtool" version="2.4"> |
| 4 <repository changeset_revision="7f67694b167c" name="package_libtool_2_4" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="7f67694b167c" name="package_libtool_2_4" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 5 </package> | 5 </package> |
| 6 <package name="Qt" version="4.8"> | 6 <package name="Qt" version="4.8"> |
| 7 <repository changeset_revision="efd2620ae8bd" name="package_qt_4_8" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | 7 <repository changeset_revision="07e57d7a3fe2" name="package_qt_4_8" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 8 </package> | 8 </package> |
| 9 <package name="zlib" version="1.2.8"> | 9 <package name="zlib" version="1.2.8"> |
| 10 <repository changeset_revision="a7636aa0a747" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | 10 <repository changeset_revision="31f1e69aae89" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 11 </package> | |
| 12 <package name="boost" version="1.53.0"> | |
| 13 <repository changeset_revision="dbdde1a2d0c5" name="package_boost_1_53" owner="iuc" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> | |
| 11 </package> | 14 </package> |
| 12 <package name="openms" version="1.11.1"> | 15 <package name="openms" version="1.11.1"> |
| 13 <install version="1.0"> | 16 <install version="1.0"> |
| 14 <actions> | 17 <actions> |
| 15 <action type="download_by_url">http://downloads.sourceforge.net/project/open-ms/OpenMS/OpenMS-1.11.1/OpenMS-1.11.1.tar.gz</action> | 18 <action type="download_by_url">http://downloads.sourceforge.net/project/open-ms/OpenMS/OpenMS-1.11.1/OpenMS-1.11.1.tar.gz</action> |
| 17 <!-- populate the environment variables from the dependend repos --> | 20 <!-- populate the environment variables from the dependend repos --> |
| 18 <action type="set_environment_for_install"> | 21 <action type="set_environment_for_install"> |
| 19 <repository changeset_revision="7f67694b167c" name="package_libtool_2_4" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | 22 <repository changeset_revision="7f67694b167c" name="package_libtool_2_4" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> |
| 20 <package name="libtool" version="2.4" /> | 23 <package name="libtool" version="2.4" /> |
| 21 </repository> | 24 </repository> |
| 22 <repository changeset_revision="efd2620ae8bd" name="package_qt_4_8" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | 25 <repository changeset_revision="07e57d7a3fe2" name="package_qt_4_8" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> |
| 23 <package name="Qt" version="4.8 " /> | 26 <package name="Qt" version="4.8 " /> |
| 24 </repository> | 27 </repository> |
| 25 <repository changeset_revision="a7636aa0a747" name="package_zlib_1_2_8" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | 28 <repository changeset_revision="31f1e69aae89" name="package_zlib_1_2_8" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> |
| 26 <package name="zlib" version="1.2.8 " /> | 29 <package name="zlib" version="1.2.8 " /> |
| 30 </repository> | |
| 31 <repository changeset_revision="dbdde1a2d0c5" name="package_boost_1_53" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | |
| 32 <package name="boost" version="1.53.0 " /> | |
| 27 </repository> | 33 </repository> |
| 28 </action> | 34 </action> |
| 29 | 35 |
| 30 <action type="change_directory">contrib</action> | 36 <action type="change_directory">contrib</action> |
| 31 <action type="shell_command">cmake .</action> | 37 <action type="shell_command">cmake . -DBUILD_TYPE=SEQAN</action> |
| 38 <action type="shell_command">cmake . -DBUILD_TYPE=LIBSVM</action> | |
| 39 <action type="shell_command">cmake . -DBUILD_TYPE=XERCESC</action> | |
| 40 <action type="shell_command">cmake . -DBUILD_TYPE=GSL</action> | |
| 41 <action type="shell_command">cmake . -DBUILD_TYPE=COINOR</action> | |
| 42 <action type="shell_command">cmake . -DBUILD_TYPE=BZIP2</action> | |
| 43 <action type="shell_command">cmake . -DBUILD_TYPE=GLPK</action> | |
| 44 | |
| 32 <action type="change_directory">..</action> | 45 <action type="change_directory">..</action> |
| 33 <action type="shell_command">cmake . -DINSTALL_PREFIX=$INSTALL_DIR</action> | 46 <action type="shell_command">cmake . -DINSTALL_PREFIX=$INSTALL_DIR</action> |
| 34 <action type="shell_command">make doc_minimal</action> | 47 <action type="shell_command">make doc_minimal</action> |
| 35 <action type="shell_command">make install</action> | 48 <action type="shell_command">make install</action> |
| 36 <action type="set_environment"> | 49 <action type="set_environment"> |