annotate tool_dependencies.xml @ 2:aa9c3d729470 draft default tip

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<?xml version="1.0"?>
<tool_dependency>
    <package name="peptide_shaker" version="1.1">
    <install version="1.0">
        <actions>
            <action type="download_by_url">http://genesis.ugent.be/maven2/eu/isas/peptideshaker/PeptideShaker/1.1.3/PeptideShaker-1.1.3.zip</action>
            <action type="move_directory_files">
                <source_directory>../PeptideShaker-1.1.3</source_directory>
                <destination_directory>$INSTALL_DIR/</destination_directory>
            </action>
            <action type="set_environment">
                <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                <environment_variable name="PEPTIDESHAKER_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                <environment_variable name="PEPTIDESHAKER_JAR_PATH" action="set_to">$INSTALL_DIR/PeptideShaker-1.1.3.jar</environment_variable>
            </action>
        </actions>
    </install>
    <readme>
        Install Galaxy package application for PeptideShaker 1.1
        http://peptide-shaker.googlecode.com 

        NOTE: Installation from Galaxy requires release v15.10 
        or requires commits :
        - https://github.com/galaxyproject/galaxy/commit/197c7b21b209a7b6fbdb9a8a11c232a2b88523fc#diff-f304e7b7451d47608f7ded8f2b9c16d2
    </readme>
  </package>
</tool_dependency>