Mercurial > repos > galaxyp > package_peptideshaker_1_11

diff tool_dependencies.xml @ 0:bd41b685f845 draft default tip

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planemo upload commit 5d078ec2d5823becc65a3bad14da6db9e0d90fdd-dirty
author galaxyp
date Fri, 10 Jun 2016 09:45:13 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jun 10 09:45:13 2016 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="peptide_shaker" version="1.11">
+    <install version="1.0">
+        <actions>
+            <action type="download_by_url">http://genesis.ugent.be/maven2/eu/isas/peptideshaker/PeptideShaker/1.11.0/PeptideShaker-1.11.0.zip</action>
+            <action type="move_directory_files">
+                <source_directory>../PeptideShaker-1.11.0</source_directory>
+                <destination_directory>$INSTALL_DIR/</destination_directory>
+            </action>
+            <action type="set_environment">
+                <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                <environment_variable name="PEPTIDESHAKER_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                <environment_variable name="PEPTIDESHAKER_JAR_PATH" action="set_to">$INSTALL_DIR/PeptideShaker-1.11.0.jar</environment_variable>
+            </action>
+        </actions>
+    </install>
+    <readme>
+        Install Galaxy package application for PeptideShaker 1.11
+        http://peptide-shaker.googlecode.com 
+
+        NOTE: Installation from Galaxy requires release v15.10 or later
+        or requires commits :
+        - https://github.com/galaxyproject/galaxy/commit/197c7b21b209a7b6fbdb9a8a11c232a2b88523fc#diff-f304e7b7451d47608f7ded8f2b9c16d2
+    </readme>
+  </package>
+</tool_dependency>