Mercurial > repos > galaxyp > pepquery2_show_sets
changeset 2:d39a43a076fc draft default tip
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pepquery2 commit 22916ed24dfb8452c8142e5d6b282d0e931af91f
| author | galaxyp |
|---|---|
| date | Wed, 08 May 2024 17:12:13 +0000 |
| parents | 8671cf7c1671 |
| children | |
| files | macros.xml pepquery2_show_sets.xml |
| diffstat | 2 files changed, 3 insertions(+), 5 deletions(-) [+] |
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--- a/macros.xml Wed Oct 18 06:40:48 2023 +0000 +++ b/macros.xml Wed May 08 17:12:13 2024 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">2.0.2</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <xml name="citations"> <citations> <citation type="doi">10.1101/gr.235028.118</citation> @@ -20,7 +20,7 @@ #end if #end def #def clean($name1) - #set $name_clean = $re.sub('[^\w\-_]', '_', $re.sub('(?i)[.](fa|fas|fasta|imzml|mzml|mzxml|mgf|raw)$','', $re.sub('.*/','', $name1.rstrip('.gz')))) + #set $name_clean = $re.sub('[^\w\-_]', '_', $re.sub('(?i)[.](fa|fas|fasta|imzml|mzml|mzxml|mgf)$','', $re.sub('.*/','', $name1.rstrip('.gz')))) #return $name_clean #end def #def ln_name($ds) @@ -31,8 +31,6 @@ #set $ext = ".mzXML" #else if $ds.is_of_type('mgf') #set $ext = ".mgf" - #else if $ds.is_of_type('thermo.raw') - #set $ext = ".raw" #else if $ds.is_of_type('fasta') #set $ext = ".fasta" #end if
--- a/pepquery2_show_sets.xml Wed Oct 18 06:40:48 2023 +0000 +++ b/pepquery2_show_sets.xml Wed May 08 17:12:13 2024 +0000 @@ -45,7 +45,7 @@ </data> </outputs> <tests> - <test> + <test expect_num_outputs="1"> <output name="pepquerydb"> <assert_contents> <has_text text="CPTAC_PDA_Discovery_Study_Proteome_PDC000270" />