diff tool_dependencies.xml @ 1:0cd177bc347d

Update tool dependencies

--- a/tool_dependencies.xml	Wed Jun 26 15:56:16 2013 -0400
+++ b/tool_dependencies.xml	Mon Sep 08 13:36:17 2014 -0500
@@ -1,14 +1,15 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="peptide_to_gff" version="master">
-        <install version="1.0">
-            <actions>
-              <action type="download_by_url">https://bitbucket.org/galaxyp/peptide_to_gff/get/5f32b86.tar.gz</action>
-              <action type="setup_virtualenv" />
-            </actions>
-        </install>
-        <readme>
-          Sets up a virtualenv for peptides-to-gff.
-        </readme>
+    <package name="biopython" version="1.61">
+        <repository name="package_biopython_1_61" owner="biopython" changeset_revision="ae9dda584395" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bcbb_gff" version="0.1">
+        <repository name="bcbb_gff_0_1" owner="galaxyp" changeset_revision="886eb2f99232" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="peptide_to_gff" version="0.1">
+        <repository name="package_peptides_to_gff_0_1" owner="galaxyp" changeset_revision="986d1d024720" toolshed="http://toolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="blat" version="35x1">
+        <repository name="package_blat_35x1" owner="iuc" changeset_revision="cc0f4b49b6f1" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>