Mercurial > repos > galaxyp > peptideshaker

annotate build_mods_loc.py @ 0:0578e296cab4 draft

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author galaxyp
date Fri, 10 May 2013 17:58:22 -0400
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1 #!/usr/bin/env python
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2
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3 import xml.etree.ElementTree as ET
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4 from os.path import exists
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5
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6 with open("searchgui_mods.loc", "w") as output:
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7 for mods_path in ["searchGUI_mods.xml", "searchGUI_usermods.xml"]:
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8 tree = ET.parse(mods_path)
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9 modifications_el = tree.getroot()
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10 for mod in modifications_el.findall("{http://www.ncbi.nlm.nih.gov}MSModSpec"):
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11 name_el = mod.find("{http://www.ncbi.nlm.nih.gov}MSModSpec_name")
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12 output.write("%s\n" % name_el.text.lower())