Mercurial > repos > galaxyp > peptideshaker
comparison build_mods_loc.py @ 0:0578e296cab4 draft
Initial commit.
author | galaxyp |
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date | Fri, 10 May 2013 17:58:22 -0400 |
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-1:000000000000 | 0:0578e296cab4 |
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1 #!/usr/bin/env python | |
2 | |
3 import xml.etree.ElementTree as ET | |
4 from os.path import exists | |
5 | |
6 with open("searchgui_mods.loc", "w") as output: | |
7 for mods_path in ["searchGUI_mods.xml", "searchGUI_usermods.xml"]: | |
8 tree = ET.parse(mods_path) | |
9 modifications_el = tree.getroot() | |
10 for mod in modifications_el.findall("{http://www.ncbi.nlm.nih.gov}MSModSpec"): | |
11 name_el = mod.find("{http://www.ncbi.nlm.nih.gov}MSModSpec_name") | |
12 output.write("%s\n" % name_el.text.lower()) |