Mercurial > repos > galaxyp > peptideshaker
comparison tool_dependencies.xml @ 6:186c754d47a4 draft
Uploaded
| author | galaxyp |
|---|---|
| date | Mon, 24 Jun 2013 14:04:26 -0400 |
| parents | 733c4ee877a4 |
| children | 5ad387477181 |
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| 5:39416af5d0bc | 6:186c754d47a4 |
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| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <package name="SearchGUI" version="1.13.1"> | 3 <package name="SearchGUI" version="1.13.1"> |
| 4 <install version="1.0"> | 4 <repository toolshed="http://toolshed.g2.bx.psu.edu" name="searchgui" owner="galaxyp" changeset_revision="57249f07debd" prior_installation_required="True"/> |
| 5 <actions> | 5 </package> |
| 6 <action type="download_by_url">http://searchgui.googlecode.com/files/SearchGUI-1.13.1_mac_and_linux.zip</action> | |
| 7 <action type="shell_command">tar -xf SearchGUI-1.13.1_mac_and_linux.tar</action> | |
| 8 <action type="shell_command">cd SearchGUI-1.13.1_mac_and_linux</action> | |
| 9 <action type="shell_command">chmod -R o+w resources</action> | |
| 10 <action type="move_directory_files"> | |
| 11 <source_directory>.</source_directory> | |
| 12 <destination_directory>$INSTALL_DIR/</destination_directory> | |
| 13 </action> | |
| 14 <action type="shell_command">mkdir -p $BIN_DIR</action> | |
| 15 <action type="set_environment"> | |
| 16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
| 17 </action> | |
| 18 </actions> | |
| 19 </install> | |
| 20 <readme> | |
| 21 This package downloads and installs the SearchGUI scripts develped as part of the Peptideshaker tool. | |
| 22 (https://github.com/jmchilton/peptide-shaker). | |
| 23 | |
| 24 </readme> | |
| 25 </package> | |
| 26 | |
| 27 <package name="PeptideShaker" version="0.20.1"> | 6 <package name="PeptideShaker" version="0.20.1"> |
| 28 <install version="1.0"> | 7 <repository toolshed="http://toolshed.g2.bx.psu.edu" name="peptideshaker_0201" owner="galaxyp" changeset_revision="a92db19b2daa" prior_installation_required="True"/> |
| 29 <actions> | |
| 30 <action type="download_by_url">http://peptide-shaker.googlecode.com/files/PeptideShaker-0.20.1.zip</action> | |
| 31 <action type="shell_command">chmod -R o+w resources</action> | |
| 32 <action type="move_directory_files"> | |
| 33 <source_directory>.</source_directory> | |
| 34 <destination_directory>$INSTALL_DIR/</destination_directory> | |
| 35 </action> | |
| 36 <action type="shell_command">mkdir -p $BIN_DIR</action> | |
| 37 <action type="set_environment"> | |
| 38 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | |
| 39 </action> | |
| 40 </actions> | |
| 41 </install> | |
| 42 <readme> | |
| 43 This package downloads and installs the peptideshaker tool as a part of the peptideshaker framework. | |
| 44 (https://github.com/jmchilton/peptide-shaker). | |
| 45 | |
| 46 </readme> | |
| 47 </package> | 8 </package> |
| 48 </tool_dependency> | 9 </tool_dependency> |