Mercurial > repos > galaxyp > peptideshaker
comparison macros.xml @ 37:7f2aeb19650f draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 51e887df61a85708547a1513b9a6616bd014d073
| author | galaxyp |
|---|---|
| date | Thu, 23 Mar 2017 18:47:12 -0400 |
| parents | bced7eb9e197 |
| children | 79e37eff006d |
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| 36:bced7eb9e197 | 37:7f2aeb19650f |
|---|---|
| 47 -variable_mods "$variable_mods_str" | 47 -variable_mods "$variable_mods_str" |
| 48 #end if | 48 #end if |
| 49 | 49 |
| 50 </token> | 50 </token> |
| 51 <token name="@SEARCHGUI_MAJOR_VERSION@">3</token> | 51 <token name="@SEARCHGUI_MAJOR_VERSION@">3</token> |
| 52 <token name="@SEARCHGUI_VERSION@">3.2.8</token> | 52 <token name="@SEARCHGUI_VERSION@">3.2.11</token> |
| 53 <xml name="general_options"> | 53 <xml name="general_options"> |
| 54 | 54 |
| 55 <section name="protein_digest_options" expanded="false" title="Protein Digestion Options"> | 55 <section name="protein_digest_options" expanded="false" title="Protein Digestion Options"> |
| 56 <conditional name="digestion"> | 56 <conditional name="digestion"> |
| 57 <param name="cleavage" type="select" label="Digestion"> | 57 <param name="cleavage" type="select" label="Digestion"> |
| 122 <param name="precursor_ion_tol_units" type="select" label="Precursor Ion Tolerance Units" | 122 <param name="precursor_ion_tol_units" type="select" label="Precursor Ion Tolerance Units" |
| 123 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions"> | 123 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions"> |
| 124 <option value="1">Parts per million (ppm)</option> | 124 <option value="1">Parts per million (ppm)</option> |
| 125 <option value="2">Daltons</option> | 125 <option value="2">Daltons</option> |
| 126 </param> | 126 </param> |
| 127 <param name="precursor_ion_tol" type="float" value="10" label="Percursor Ion Tolerance" | 127 <param name="precursor_ion_tol" type="float" value="10" label="Precursor Ion Tolerance" |
| 128 help="Provide error value for precursor ion, based on instrument used. 10 ppm recommended for Orbitrap instrument"/> | 128 help="Provide error value for precursor ion, based on instrument used. 10 ppm recommended for Orbitrap instrument"/> |
| 129 <param name="fragment_tol" type="float" value="0.5" label="Fragment Tolerance (Daltons)" | 129 <param name="fragment_tol" type="float" value="0.5" label="Fragment Tolerance (Daltons)" |
| 130 help="Provide error value for fragment ions, based on instrument used"/> | 130 help="Provide error value for fragment ions, based on instrument used"/> |
| 131 <param name="min_charge" label="Minimum Charge" value="2" type="integer" help="Lowest searched charge value for fragment ions"/> | 131 <param name="min_charge" label="Minimum Charge" value="2" type="integer" help="Lowest searched charge value for fragment ions"/> |
| 132 <param name="max_charge" label="Maximum Charge" value="4" type="integer" help="Highest searched charge value for fragment ions"/> | 132 <param name="max_charge" label="Maximum Charge" value="4" type="integer" help="Highest searched charge value for fragment ions"/> |