Mercurial > repos > galaxyp > peptideshaker
comparison peptide_shaker.xml @ 52:864bd76db767 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 9dc7c9c3ebd64f14c0ce95a0dc190361a90fa4fb
author | galaxyp |
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date | Wed, 16 Jan 2019 08:18:39 -0500 |
parents | 5814883aa217 |
children | d67a3c1bfd09 |
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51:66690eb50a32 | 52:864bd76db767 |
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1 <tool id="peptide_shaker" name="Peptide Shaker" version="@PEPTIDESHAKER_VERSION@"> | 1 <tool id="peptide_shaker" name="Peptide Shaker" version="@PEPTIDESHAKER_VERSION@.2"> |
2 <description> | 2 <description> |
3 Perform protein identification using various search engines based on results from SearchGUI | 3 Perform protein identification using various search engines based on results from SearchGUI |
4 </description> | 4 </description> |
5 <macros> | 5 <macros> |
6 <import>macros.xml</import> | 6 <import>macros.xml</import> |
191 <param name="psm_fdr" label="FDR at the PSM level" help="In percent (default 1% FDR: '1')" value="1" type="float" /> | 191 <param name="psm_fdr" label="FDR at the PSM level" help="In percent (default 1% FDR: '1')" value="1" type="float" /> |
192 <param name="protein_fraction_mw_confidence" value="95.0" type="float" label="Minimum confidence required for a protein in the fraction MW plot" | 192 <param name="protein_fraction_mw_confidence" value="95.0" type="float" label="Minimum confidence required for a protein in the fraction MW plot" |
193 help="default 95%: '95.0'" /> | 193 help="default 95%: '95.0'" /> |
194 <conditional name="ptm_score"> | 194 <conditional name="ptm_score"> |
195 <param name="ptm_score_selector" type="select" label="The PTM probabilistic score to use for PTM localization"> | 195 <param name="ptm_score_selector" type="select" label="The PTM probabilistic score to use for PTM localization"> |
196 <option value="0" selected="True">A-score</option> | 196 <option value="0">A-score</option> |
197 <option value="1">PhosphoRS</option> | 197 <option value="1" selected="True">PhosphoRS</option> |
198 <option value="2">None</option> | 198 <option value="2">None</option> |
199 </param> | 199 </param> |
200 <when value="0" /> | 200 <when value="0" /> |
201 <when value="1"> | 201 <when value="1"> |
202 <param name="score_neutral_losses" label="Include Neutral Losses in A Score" type="boolean" truevalue="1" falsevalue="0" /> | 202 <param name="score_neutral_losses" label="Include Neutral Losses in A Score" type="boolean" truevalue="1" falsevalue="0" /> |