Mercurial > repos > galaxyp > peptideshaker

comparison ident_params.xml @ 59:943a34df6047 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 1cb321cbce2a6528764abc9c9431687f56c57588"
author galaxyp
date Fri, 21 May 2021 19:13:14 +0000
parents 07ff622ec007
children 3ec27b4cee7c
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58:07ff622ec007 59:943a34df6047
28 ##################################################### 28 #####################################################
29 ## generate IdentificationParameters for SearchGUI ## 29 ## generate IdentificationParameters for SearchGUI ##
30 ##################################################### 30 #####################################################
31 searchgui eu.isas.searchgui.cmd.IdentificationParametersCLI 31 searchgui eu.isas.searchgui.cmd.IdentificationParametersCLI
32 --exec_dir="./bin/" 32 --exec_dir="./bin/"
33 -use_log_folder 0
33 -out './IdentificationParametersOutput.par' 34 -out './IdentificationParametersOutput.par'
34
35 ## SPECTRUM MATCHING PARAMETERS 35 ## SPECTRUM MATCHING PARAMETERS
36 36
37 -frag_tol '${spectrum_matching_options.fragment_tol}' 37 -frag_tol '${spectrum_matching_options.fragment_tol}'
38 -frag_ppm '${spectrum_matching_options.fragment_tol_units}' 38 -frag_ppm '${spectrum_matching_options.fragment_tol_units}'
39 -prec_tol '${spectrum_matching_options.precursor_ion_tol}' 39 -prec_tol '${spectrum_matching_options.precursor_ion_tol}'