Mercurial > repos > galaxyp > peptideshaker
comparison macros.xml @ 42:9e20c34298e3 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 0ce31532e2d232c87298f3aa73d02fc201fa108d
| author | galaxyp |
|---|---|
| date | Tue, 23 Jan 2018 08:48:07 -0500 |
| parents | 3634c90301af |
| children | 7963340ab569 |
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| 41:3634c90301af | 42:9e20c34298e3 |
|---|---|
| 120 | 120 |
| 121 <section name="precursor_options" expanded="false" title="Precursor Options"> | 121 <section name="precursor_options" expanded="false" title="Precursor Options"> |
| 122 <param name="precursor_ion_tol_units" type="select" label="Precursor Ion Tolerance Units" | 122 <param name="precursor_ion_tol_units" type="select" label="Precursor Ion Tolerance Units" |
| 123 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions"> | 123 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions"> |
| 124 <option value="1">Parts per million (ppm)</option> | 124 <option value="1">Parts per million (ppm)</option> |
| 125 <option value="2">Daltons</option> | 125 <option value="0">Daltons</option> |
| 126 </param> | 126 </param> |
| 127 <param name="precursor_ion_tol" type="float" value="10" label="Precursor Ion Tolerance" | 127 <param name="precursor_ion_tol" type="float" value="10" label="Precursor Ion Tolerance" |
| 128 help="Provide error value for precursor ion, based on instrument used. 10 ppm recommended for Orbitrap instrument"/> | 128 help="Provide error value for precursor ion, based on instrument used. 10 ppm recommended for Orbitrap instrument"/> |
| 129 <param name="fragment_tol_units" type="select" label="Fragment Tolerance Units" | 129 <param name="fragment_tol_units" type="select" label="Fragment Tolerance Units" |
| 130 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions"> | 130 help="Select based on instrument used, as different machines provide different quality of spectra. ppm is a standard for most precursor ions"> |
| 131 <option value="1">Parts per million (ppm)</option> | 131 <option value="1">Parts per million (ppm)</option> |
| 132 <option value="2">Daltons</option> | 132 <option value="0">Daltons</option> |
| 133 </param> | 133 </param> |
| 134 <param name="fragment_tol" type="float" value="0.5" label="Fragment Tolerance" | 134 <param name="fragment_tol" type="float" value="0.5" label="Fragment Tolerance" |
| 135 help="Provide error value for fragment ions, based on instrument used"/> | 135 help="Provide error value for fragment ions, based on instrument used"/> |
| 136 <param name="min_charge" label="Minimum Charge" value="2" type="integer" help="Lowest searched charge value for fragment ions"/> | 136 <param name="min_charge" label="Minimum Charge" value="2" type="integer" help="Lowest searched charge value for fragment ions"/> |
| 137 <param name="max_charge" label="Maximum Charge" value="4" type="integer" help="Highest searched charge value for fragment ions"/> | 137 <param name="max_charge" label="Maximum Charge" value="4" type="integer" help="Highest searched charge value for fragment ions"/> |