Mercurial > repos > galaxyp > peptideshaker

comparison searchgui.xml @ 31:f3f67aa3123b draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 9434ce2f6323d91e6b10eeabab531d5e13ef4a6f
author galaxyp
date Wed, 18 Jan 2017 16:43:44 -0500
parents ad60446b1e93
children ff592231f118
comparison
equal deleted inserted replaced
30:ad60446b1e93 31:f3f67aa3123b
28 28
29 ##Create a searchgui.properties file for the version, which will be added to the searchgui_results if not already present 29 ##Create a searchgui.properties file for the version, which will be added to the searchgui_results if not already present
30 echo "searchgui.version=@SEARCHGUI_VERSION@" >> searchgui.properties; 30 echo "searchgui.version=@SEARCHGUI_VERSION@" >> searchgui.properties;
31 31
32 #for $mgf in $peak_lists: 32 #for $mgf in $peak_lists:
33 #set $input_name = $mgf.display_name.replace(".mgf", "") + ".mgf" 33 #set $input_name = $mgf.display_name.split('/')[-1].replace(".mgf", "") + ".mgf"
34 ln -s -f '${mgf}' '${input_name}'; 34 ln -s -f '${mgf}' '${input_name}';
35 #set $encoded_id = $__app__.security.encode_id($mgf.id) 35 #set $encoded_id = $__app__.security.encode_id($mgf.id)
36 echo "Spectrums:${mgf.display_name}(API:${encoded_id}) "; 36 echo "Spectrums:${mgf.display_name}(API:${encoded_id}) ";
37 #end for 37 #end for
38 ##ln -s "${input_database}" input_database.fasta; 38 ##ln -s "${input_database}" input_database.fasta;