diff README_REPO.md @ 0:0578e296cab4 draft

Initial commit.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README_REPO.md	Fri May 10 17:58:22 2013 -0400
@@ -0,0 +1,18 @@
+Tool wrapper for SearchGUI + PeptideShaker. This tool takes any number
+of mgf files and performs X! Tandem and OMSSA searches on these via
+SearchGUI and merges the results using PeptideShaker.
+
+For Galaxy-P we are installing this tool via CloudBioLinux
+(https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio_proteomics.py). While
+this fabric script may not be exactly appropriate for your environment
+it may serve as a template for how to install this software. In
+particular these tools require CLI wrappers to be placed for
+PeptideShaker and SearchGUI that can be installed as demostrated in
+these fabric functions.
+
+Note: Also SearchGUI requires a version greater than 1.12.2 which
+contained several bugs preventing this from working on the
+command-line and via Linux.
+
+Also, PeptideShaker may require xvfb to simulate an X environment if
+this is installed on a headless server.