diff searchgui.xml @ 60:a6ff76e057fd draft

"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 62d0c9c13383dc58cc75cd273e0395e53a42b003"

--- a/searchgui.xml	Fri May 21 19:13:14 2021 +0000
+++ b/searchgui.xml	Tue Jul 20 08:55:11 2021 +0000
@@ -180,7 +180,7 @@
         <!-- Search Engine Selection -->
         <section name="search_engines_options" expanded="true" title="Search Engine Options">
             <param name="engines" type="select" display="checkboxes" multiple="True" label="DB-Search Engines">
-                <help>Comet and Tide shouldn't both be selected since they use a similar algoritm. OMSSA may not work into isolated environments like containers. 
+                <help>Comet and Tide shouldn't both be selected since they use a similar algoritm. OMSSA might not work into isolated environments like containers. Ms Amanda may not work either when executed into isolated environments based on MacOS X.
                     MetaMorpheus only produce results when using mzML format.</help>
                 <option value="X!Tandem" selected="True">X!Tandem</option>
                 <option value="MSGF" selected="True">MS-GF+</option>
@@ -241,8 +241,8 @@
             <param name="engines" value="X!Tandem,MSGF,MyriMatch,Comet"/>
             <output name="searchgui_results" file="searchgui_tiny_result_default_4engines.zip" ftype="searchgui_archive" compare="sim_size" delta="30000" />
         </test>
-        
-        
+
+
         <!-- Test that search works with MetaMorpheus with default parameters works-->
         <!-- Test data has been taken from metamorpheus galaxy tool -->
         <test>
@@ -350,7 +350,7 @@
 
     >generic[your tag]|[protein accession]|[protein description]
 
-    or 
+    or
 
     >generic[your tag]|[protein accession]