Mercurial > repos > galaxyp > peptideshaker
view test-data/peptide_shaker_certificate_result2.tabular @ 20:2cafc729b2ae draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 0e976aeeed9d516e0ad4735dc847b1f2eba3532b
author | iracooke |
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date | Sun, 31 May 2015 09:05:57 -0400 |
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Project Details1: PeptideShaker Version: 0.37.4-beta 2: Date: Sat Feb 14 20:04:49 CET 2015 3: Experiment: Galaxy_Experiment_2015021420041423940686 4: Sample: Sample_2015021420041423940686 5: Replicate Number: 1 6: Identification Algorithms: X!Tandem and MS-GF+ Database Search Parameters 1: Precursor Accuracy Unit: ppm 2: Precursor Ion m/z Tolerance: 100.0 3: Fragment Ion m/z Tolerance: 0.5 4: Enzyme: Trypsin 5: Number of Missed Cleavages: Not implemented 6: Database: input_database.fasta 7: Forward Ion: b 8: Rewind Ion: y 9: Fixed Modifications: carbamidomethyl c 10: Variable Modifications: oxidation of m, acetylation of protein n-term, pyro-cmc, pyro-glu from n-term e, pyro-glu from n-term q 11: Refinement Variable Modifications: 12: Refinement Fixed Modifications: Input Filters 1: Minimal Peptide Length: 1 2: Maximal Peptide Length: 30 3: Precursor m/z Tolerance: 10.0 4: Precursor m/z Tolerance Unit: Yes 5: Unrecognized Modifications Discarded: No Validation Summary 1: #Validated Proteins: 0.0 2: Protein Total: 0.0 3Protein FDR Limit: 1.0 % 4: Protein FNR Limit: 0.0 % 5: Protein Confidence Limit: -1.0 % 6: Protein PEP Limit: 101.0 % 7: Protein Confidence Accuracy: 0.0 % 8: #Validated Peptides: 0.0 9: Peptide Total: 0.0 10: Peptide FDR Limit: 1.0 % 11: Peptide FNR Limit: 0.0 % 12: Peptide Confidence Limit: -1.0 % 13: Peptide PEP Limit: 101.0 % 14: Peptide Confidence Accuracy: 0.0 % 15: #Validated PSM: 0.0 16: PSM Total: 0.0 17: PSM FDR Limit: 1.0 % 18: PSM FNR Limit: 0.0 % 19: PSM Confidence Limit: -1.0 % 20: PSM PEP Limit: 101.0 % 21: PSM Confidence Accuracy: 0.0 % Postranslational Modification Scoring Settings 1: A-score: No 2: Accounting for Neutral Losses: No 3: False Location Rate: 1.0 Spectrum Counting Parameters 1: Method: NSAF 2: Validated Matches Only: Yes Annotation Settings 1: Intensity Limit: 0.75 2: Automatic Annotation: Yes 3: Selected Ions: b, y 4: Neutral Losses: NH3, H2O 5: Neutral Losses Sequence Dependence: Yes 6: Selected Charges: 1, 2 7: Fragment Ion m/z Tolerance: 0.5