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added file dependencies
author galaxyp
date Thu, 20 Jun 2013 16:19:49 -0400
parents fb591fc7241c
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<tool id="compomics_reverse" name="Create Target-Decoy Database" version="0.1.0">
  <description>Creates a target-decoy database for use with Peptide Shaker</description>

  <requirements>
  </requirements>

  <command interpreter="python">reverse.py --input='$input' --output='$output'</command>

  <inputs>
    <param format="fasta" name="input" type="data" label="FASTA Input" />
  </inputs>

  <outputs>
    <data format="fasta" name="output" />
  </outputs>

  <help>
**What it does**

Given an input database, this tool will produce a target-decoy
database in the format required by PeptideShaker using dbtoolkit.

------

**Citation**

For the underlying tool, please cite `Martens et al. DBToolkit: processing protein databases for peptide-centric proteomics. Bioinformatics (2005) vol. 21 (17) pp. 3584-5`.

If you use this tool in Galaxy, please cite Chilton J, et al. https://bitbucket.org/galaxyp/galaxyp-toolshed-peptideshaker .

  </help>
</tool>