view test-data/peptide_shaker_peptides_result2.tabular @ 43:7963340ab569 draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 6afe42e2f4b9d780c4cee76a4dcd9cac1e1ea0ad
author galaxyp
date Mon, 05 Mar 2018 10:09:34 -0500
parents ad60446b1e93
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	Protein(s)	Protein Group(s)	#Validated Protein Group(s)	Unique Database	Sequence	Modified Sequence	Position	AAs Before	AAs After	Variable Modifications	Fixed Modifications	Localization Confidence	#Validated PSMs	#PSMs	Confidence [%]	Validation
1	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	SVISIGEVESEGQYVTLENTSSGR	NH2-SVISIGEVESEGQYVTLENTSSGR-COOH	511; 504; 29	SK; SK; SK	SK; SK; SK				2	2	100.0	Doubtful
2	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	YESQLSQIR	NH2-YESQLSQIR-COOH	323; 323	AR; AR	QS; QS				2	2	100.0	Doubtful
3	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	SHVVGAGLGGGSMGSMNQSMSLHGGR	NH2-SHVVGAGLGGGSMGSMNQSMSLHGGR-COOH	37; 37	RR; RR	AS; AS				2	2	100.0	Doubtful
4	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	EFDVEPLKEAYQAEIDEAK	NH2-EFDVEPLKEAYQAEIDEAK-COOH	128; 128	RR; RR	NL; NL				2	2	100.0	Doubtful
5	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	ISITTYEEEIEDLHATAR	NH2-ISITTYEEEIEDLHATAR-COOH	161; 161	LK; LK	IN; IN				2	2	100.0	Doubtful
6	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	ISTGYITENIGGFR	NH2-ISTGYITENIGGFR-COOH	442; 442	NR; NR	SE; SE				4	4	100.0	Doubtful
7	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	ASLGMAAGVAGGIATK	NH2-ASLGMAAGVAGGIATK-COOH	63; 63	GR; GR	DM; DM				2	2	100.0	Doubtful
8	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	LISATSISPEHK	NH2-LISATSISPEHK-COOH	549; 542; 67	DR; DR; DR	ID; ID; ID				4	4	100.0	Doubtful
9	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	LHVEMESMIEELQMLMDAK	NH2-LHVEMESMIEELQMLMDAK-COOH	403; 403	NK; NK	LS; LS				4	4	100.0	Doubtful
10	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	NLLLDANKENGELK	NH2-NLLLDANKENGELK-COOH	147; 147	AK; AK	IS; IS				4	4	100.0	Doubtful
11	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	SLQAENEQLR	NH2-SLQAENEQLR-COOH	110; 110	VR; VR	LK; LK				2	2	100.0	Doubtful
12	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2; cds.comp41779_c0_seq3	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	KGDIIATVDEWGPVNR	NH2-KGDIIATVDEWGPVNR-COOH	590; 583; 108	AK; AK; AK	NS; NS; NS				2	2	100.0	Doubtful
13	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	MEIITITNQLQR	NH2-MEIITITNQLQR-COOH	373; 373	MK; MK	SN; SN				2	2	100.0	Doubtful
14	cds.comp52727_c0_seq1; cds.comp52727_c0_seq2	cds.comp52727_c0_seq1, cds.comp52727_c0_seq2 (Doubtful)	1	1	EIRDEYDNQLNLLSADLESK	NH2-EIRDEYDNQLNLLSADLESK-COOH	298; 298	MR; MR	YQ; YQ				2	2	100.0	Doubtful
15	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	VGNLEEELEFLR	NH2-VGNLEEELEFLR-COOH	254; 254	QK; QK	SV; SV				4	4	100.0	Doubtful
16	cds.comp41779_c0_seq1; cds.comp41779_c0_seq2	cds.comp41779_c0_seq1, cds.comp41779_c0_seq2 (Doubtful)	1	1	INEDRIDELQDKVNK	NH2-INEDRIDELQDKVNK-COOH	179; 179	AR; AR	LI; LI				2	2	100.0	Doubtful