Mercurial > repos > galaxyp > peptideshaker
view admin_scripts/build_mods_loc.py @ 59:943a34df6047 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 1cb321cbce2a6528764abc9c9431687f56c57588"
author | galaxyp |
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date | Fri, 21 May 2021 19:13:14 +0000 |
parents | bb0130ff73ce |
children |
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#!/usr/bin/env python import xml.etree.ElementTree as ET with open("searchgui_mods.loc.sample", "w") as output: for mods_path in ["searchGUI_mods.xml", "searchGUI_usermods.xml"]: tree = ET.parse(mods_path) modifications_el = tree.getroot() for mod in modifications_el.findall("{http://www.ncbi.nlm.nih.gov}MSModSpec"): name_el = mod.find("{http://www.ncbi.nlm.nih.gov}MSModSpec_name") output.write("%s\n" % name_el.text.lower())