Mercurial > repos > galaxyp > peptideshaker
view admin_scripts/build_mods_loc.py @ 40:a72c48001f7c draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit c21e14c8f5c7cd0bbf0fc7920f54cac563d2378c
author | galaxyp |
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date | Wed, 27 Sep 2017 08:59:54 -0400 |
parents | 2cafc729b2ae |
children | bb0130ff73ce |
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#!/usr/bin/env python import xml.etree.ElementTree as ET from os.path import exists with open("searchgui_mods.loc.sample", "w") as output: for mods_path in ["searchGUI_mods.xml", "searchGUI_usermods.xml"]: tree = ET.parse(mods_path) modifications_el = tree.getroot() for mod in modifications_el.findall("{http://www.ncbi.nlm.nih.gov}MSModSpec"): name_el = mod.find("{http://www.ncbi.nlm.nih.gov}MSModSpec_name") output.write("%s\n" % name_el.text.lower())