# HG changeset patch
# User galaxyp
# Date 1490309232 14400
# Node ID 7f2aeb19650f136322b955f1c4ba3b4924392094
# Parent  bced7eb9e1970c5d8e6e349e1f06d3fb856b7219
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/peptideshaker commit 51e887df61a85708547a1513b9a6616bd014d073

diff -r bced7eb9e197 -r 7f2aeb19650f macros.xml
--- a/macros.xml	Mon Feb 27 14:29:05 2017 -0500
+++ b/macros.xml	Thu Mar 23 18:47:12 2017 -0400
@@ -49,7 +49,7 @@
 
     </token>
     <token name="@SEARCHGUI_MAJOR_VERSION@">3</token>
-    <token name="@SEARCHGUI_VERSION@">3.2.8</token>
+    <token name="@SEARCHGUI_VERSION@">3.2.11</token>
     <xml name="general_options">
 
         <section name="protein_digest_options" expanded="false" title="Protein Digestion Options">
@@ -124,7 +124,7 @@
                 <option value="1">Parts per million (ppm)</option>
                 <option value="2">Daltons</option>
             </param>
-            <param name="precursor_ion_tol" type="float" value="10" label="Percursor Ion Tolerance"
+            <param name="precursor_ion_tol" type="float" value="10" label="Precursor Ion Tolerance"
                 help="Provide error value for precursor ion, based on instrument used. 10 ppm recommended for Orbitrap instrument"/>
             <param name="fragment_tol" type="float" value="0.5" label="Fragment Tolerance (Daltons)"
                 help="Provide error value for fragment ions, based on instrument used"/>
diff -r bced7eb9e197 -r 7f2aeb19650f peptide_shaker.xml
--- a/peptide_shaker.xml	Mon Feb 27 14:29:05 2017 -0500
+++ b/peptide_shaker.xml	Thu Mar 23 18:47:12 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="peptide_shaker" name="Peptide Shaker" version="1.16.0">
+<tool id="peptide_shaker" name="Peptide Shaker" version="1.16.3">
     <description>
         Perform protein identification using various search engines based on results from SearchGUI
     </description>
@@ -6,7 +6,7 @@
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="1.16.0">peptide-shaker</requirement>
+        <requirement type="package" version="1.16.3">peptide-shaker</requirement>
     </requirements>
     <expand macro="stdio" />
     <command>
diff -r bced7eb9e197 -r 7f2aeb19650f searchgui.xml
--- a/searchgui.xml	Mon Feb 27 14:29:05 2017 -0500
+++ b/searchgui.xml	Thu Mar 23 18:47:12 2017 -0400
@@ -1,4 +1,4 @@
-<tool id="search_gui" name="Search GUI" version="@SEARCHGUI_VERSION@.1">
+<tool id="search_gui" name="Search GUI" version="@SEARCHGUI_VERSION@">
     <description>
         Perform protein identification using various search engines and prepare results for input to Peptide Shaker
     </description>
diff -r bced7eb9e197 -r 7f2aeb19650f test-data/peptide_shaker_result1.zip
Binary file test-data/peptide_shaker_result1.zip has changed
diff -r bced7eb9e197 -r 7f2aeb19650f test-data/tiny_searchgui_result1.zip
Binary file test-data/tiny_searchgui_result1.zip has changed
diff -r bced7eb9e197 -r 7f2aeb19650f test-data/tiny_searchgui_result_amandaonly.zip
Binary file test-data/tiny_searchgui_result_amandaonly.zip has changed