-Tool wrapper for SearchGUI + PeptideShaker. This tool takes any number -of mgf files and performs X! Tandem and OMSSA searches on these via -SearchGUI and merges the results using PeptideShaker.
-For Galaxy-P we are installing this tool via CloudBioLinux -(https://github.com/jmchilton/cloudbiolinux/blob/proteomics/cloudbio/custom/bio_proteomics.py). While -this fabric script may not be exactly appropriate for your environment -it may serve as a template for how to install this software. In -particular these tools require CLI wrappers to be placed for -PeptideShaker and SearchGUI that can be installed as demostrated in -these fabric functions.
-Note: Also SearchGUI requires a version greater than 1.12.2 which -contained several bugs preventing this from working on the -command-line and via Linux.
-Also, PeptideShaker may require xvfb to simulate an X environment if -this is installed on a headless server.
-Obtaining Tools
-Repositories for all Galaxy-P tools can be found at -https:/bitbucket.org/galaxyp/.
-Contact
-Please send suggestions for improvements and bug reports to -jmchilton@gmail.com.
-License
-All Galaxy-P tools are licensed under the Apache License Version 2.0 -unless otherwise documented.
-Tool Versioning
-Galaxy-P tools will have versions of the form X.Y.Z. Versions -differing only after the second decimal should be completely -compatible with each other. Breaking changes should result in an -increment of the number before and/or after the first decimal. All -tools of version less than 1.0.0 should be considered beta.
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