Mercurial > repos > galaxyp > percolator

annotate test-data/target_ds2_withperco.mzid @ 6:07107a686ce9 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit de8cdf895c3c6113f301a119788701b2465a1b1b"
author galaxyp
date Thu, 13 Aug 2020 03:53:33 -0400
parents 7a0951d0e13e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
1 <?xml version="1.0" encoding="UTF-8"?>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
2 <MzIdentML id="MS-GF+" version="1.1.0" xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" creationDate="2017-03-01T15:00:34" >
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
3 <cvList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
4 <cv id="PSI-MS" uri="http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo" version="3.30.0" fullName="PSI-MS"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
5 <cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" fullName="UNIMOD"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
6 <cv id="UO" uri="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo" fullName="UNIT-ONTOLOGY"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
7 </cvList>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
8 <AnalysisSoftwareList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
9 <AnalysisSoftware version="Beta (v10072)" name="MS-GF+" id="ID_software">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
10 <SoftwareName>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
11 <cvParam accession="MS:1002048" cvRef="PSI-MS" name="MS-GF+"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
12 </SoftwareName>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
13 </AnalysisSoftware>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
14 </AnalysisSoftwareList>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
15 <AnalysisCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
16 <SpectrumIdentification spectrumIdentificationList_ref="SI_LIST_1" spectrumIdentificationProtocol_ref="SearchProtocol_1" id="SpecIdent_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
17 <InputSpectra spectraData_ref="SID_1"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
18 <SearchDatabaseRef searchDatabase_ref="SearchDB_1"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
19 </SpectrumIdentification>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
20 </AnalysisCollection>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
21 <AnalysisProtocolCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
22 <SpectrumIdentificationProtocol analysisSoftware_ref="ID_software" id="SearchProtocol_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
23 <SearchType>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
24 <cvParam accession="MS:1001083" cvRef="PSI-MS" name="ms-ms search"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
25 </SearchType>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
26 <AdditionalSearchParams>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
27 <cvParam accession="MS:1001211" cvRef="PSI-MS" name="parent mass type mono"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
28 <cvParam accession="MS:1001256" cvRef="PSI-MS" name="fragment mass type mono"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
29 <userParam value="false" name="TargetDecoyApproach"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
30 <userParam value="-1" name="MinIsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
31 <userParam value="2" name="MaxIsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
32 <userParam value="HCD" name="FragmentMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
33 <userParam value="QExactive" name="Instrument"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
34 <userParam value="TMT" name="Protocol"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
35 <userParam value="2" name="NumTolerableTermini"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
36 <userParam value="1" name="NumMatchesPerSpec"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
37 <userParam value="2" name="MaxNumModifications"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
38 <userParam value="6" name="MinPepLength"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
39 <userParam value="50" name="MaxPepLength"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
40 <userParam value="2" name="MinCharge"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
41 <userParam value="6" name="MaxCharge"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
42 </AdditionalSearchParams>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
43 <ModificationParams>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
44 <SearchModification residues="M" massDelta="15.994915" fixedMod="false">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
45 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
46 </SearchModification>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
47 <SearchModification residues="C" massDelta="57.021465" fixedMod="true">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
48 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
49 </SearchModification>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
50 <SearchModification residues="K" massDelta="229.16293" fixedMod="true">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
51 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
52 </SearchModification>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
53 <SearchModification residues="." massDelta="229.16293" fixedMod="true">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
54 <SpecificityRules>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
55 <cvParam accession="MS:1001189" cvRef="PSI-MS" name="modification specificity N-term"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
56 </SpecificityRules>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
57 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
58 </SearchModification>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
59 </ModificationParams>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
60 <Enzymes>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
61 <Enzyme missedCleavages="1000" semiSpecific="false" id="Tryp">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
62 <EnzymeName>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
63 <cvParam accession="MS:1001251" cvRef="PSI-MS" name="Trypsin"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
64 </EnzymeName>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
65 </Enzyme>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
66 </Enzymes>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
67 <ParentTolerance>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
68 <cvParam accession="MS:1001412" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance plus value"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
69 <cvParam accession="MS:1001413" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance minus value"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
70 </ParentTolerance>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
71 <Threshold>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
72 <cvParam accession="MS:1001494" cvRef="PSI-MS" name="no threshold"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
73 </Threshold>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
74 </SpectrumIdentificationProtocol>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
75 </AnalysisProtocolCollection>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
76 <DataCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
77 <Inputs>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
78 <SearchDatabase numDatabaseSequences="102915" location="/mnt/galaxy/data/job_working_directory/000/235/235188/working/dbase.fasta" id="SearchDB_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
79 <FileFormat>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
80 <cvParam accession="MS:1001348" cvRef="PSI-MS" name="FASTA format"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
81 </FileFormat>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
82 <DatabaseName>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
83 <userParam name="dbase.fasta"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
84 </DatabaseName>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
85 </SearchDatabase>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
86 <SpectraData location="/tmp/tmp_OeEkM/dataset_362460.dat.mzml" name="dataset_362460.dat.mzml" id="SID_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
87 <FileFormat>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
88 <cvParam accession="MS:1000584" cvRef="PSI-MS" name="mzML file"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
89 </FileFormat>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
90 <SpectrumIDFormat>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
91 <cvParam accession="MS:1000768" cvRef="PSI-MS" name="Thermo nativeID format"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
92 </SpectrumIDFormat>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
93 </SpectraData>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
94 </Inputs>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
95 <AnalysisData>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
96 <SpectrumIdentificationList id="SI_LIST_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
97 <FragmentationTable>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
98 <Measure id="Measure_MZ">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
99 <cvParam accession="MS:1001225" cvRef="PSI-MS" unitCvRef="PSI-MS" unitName="m/z" unitAccession="MS:1000040" name="product ion m/z"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
100 </Measure>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
101 </FragmentationTable>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
102 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9576" id="SIR_77">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
103 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep362" calculatedMassToCharge="420.2504577636719" experimentalMassToCharge="419.74969482421875" chargeState="2" id="SII_77_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
104 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31443849_362_176"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
105 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31444212_362_184"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
106 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31444767_362_176"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
107 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31445005_362_193"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
108 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31445234_362_184"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
109 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-35" name="MS-GF:RawScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
110 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="1" name="MS-GF:DeNovoScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
111 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0038289425" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
112 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="42844.62" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
113 <userParam value="-1" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
114 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
115 <userParam value="0.008446768" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
116 <userParam value="0.0048889467" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
117 <userParam value="0.003557821" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
118 <userParam value="979701.5" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
119 <userParam value="4" name="NumMatchedMainIons"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
120 <userParam value="7.9951363" name="MeanErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
121 <userParam value="4.7648582" name="StdevErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
122 <userParam value="7.9951363" name="MeanErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
123 <userParam value="4.7648582" name="StdevErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
124 <userParam value="0.79569435" name="MeanRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
125 <userParam value="9.273238" name="StdevRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
126 <userParam value="0.79569435" name="MeanRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
127 <userParam value="9.273238" name="StdevRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
128 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
129 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9576" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
130 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
131 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9739" id="SIR_240">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
132 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep363" calculatedMassToCharge="1044.435546875" experimentalMassToCharge="1045.4466552734375" chargeState="2" id="SII_240_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
133 <PeptideEvidenceRef peptideEvidence_ref="PepEv_36274231_363_1"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
134 <PeptideEvidenceRef peptideEvidence_ref="PepEv_36275421_363_1"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
135 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-75" name="MS-GF:RawScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
136 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="203" name="MS-GF:DeNovoScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
137 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0039381883" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
138 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="49910.527" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
139 <userParam value="2" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
140 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
141 <userParam value="0.04388853" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
142 <userParam value="0.0018504228" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
143 <userParam value="0.04203811" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
144 <userParam value="211725.44" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
145 <userParam value="3" name="NumMatchedMainIons"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
146 <userParam value="5.0645747" name="MeanErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
147 <userParam value="4.3375416" name="StdevErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
148 <userParam value="5.0645747" name="MeanErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
149 <userParam value="4.3375416" name="StdevErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
150 <userParam value="-5.0645747" name="MeanRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
151 <userParam value="4.3375416" name="StdevRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
152 <userParam value="-5.0645747" name="MeanRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
153 <userParam value="4.3375416" name="StdevRelErrorTop7"/>
2
7a0951d0e13e planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 4ca7fcd1587c906db3314048a223d23b63b3f038
galaxyp
parents: 1
diff changeset
154 <userParam name="percolator:score" value="-1.404"/>
7a0951d0e13e planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 4ca7fcd1587c906db3314048a223d23b63b3f038
galaxyp
parents: 1
diff changeset
155 <userParam name="percolator:psm_p_value" value="0.000e+00"/>
7a0951d0e13e planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 4ca7fcd1587c906db3314048a223d23b63b3f038
galaxyp
parents: 1
diff changeset
156 <userParam name="percolator:psm_q_value" value="1.000e+00"/>
7a0951d0e13e planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 4ca7fcd1587c906db3314048a223d23b63b3f038
galaxyp
parents: 1
diff changeset
157 <userParam name="percolator:psm_pep" value="1.000e+00"/>
7a0951d0e13e planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 4ca7fcd1587c906db3314048a223d23b63b3f038
galaxyp
parents: 1
diff changeset
158 <userParam name="percolator:peptide_q_value" value="1.000e+00"/>
7a0951d0e13e planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 4ca7fcd1587c906db3314048a223d23b63b3f038
galaxyp
parents: 1
diff changeset
159 <userParam name="percolator:peptide_pep" value="1.000e+00"/>
1
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
160 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
161 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9739" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
162 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
163 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9624" id="SIR_125">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
164 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep364" calculatedMassToCharge="412.7393798828125" experimentalMassToCharge="412.7425537109375" chargeState="2" id="SII_125_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
165 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2217873_364_124"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
166 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2218487_364_118"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
167 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2219651_364_124"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
168 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2220892_364_124"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
169 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2221016_364_118"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
170 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2222191_364_118"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
171 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2223367_364_124"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
172 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2223824_364_94"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
173 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2224990_364_94"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
174 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2226818_364_124"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
175 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2228053_364_118"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
176 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-36" name="MS-GF:RawScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
177 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="7" name="MS-GF:DeNovoScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
178 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0041994834" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
179 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="46990.855" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
180 <userParam value="0" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
181 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
182 <userParam value="0.022749394" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
183 <userParam value="0.0055547007" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
184 <userParam value="0.017194694" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
185 <userParam value="1108970.5" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
186 <userParam value="3" name="NumMatchedMainIons"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
187 <userParam value="12.467069" name="MeanErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
188 <userParam value="2.0159998" name="StdevErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
189 <userParam value="12.467069" name="MeanErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
190 <userParam value="2.0159998" name="StdevErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
191 <userParam value="-12.467069" name="MeanRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
192 <userParam value="2.0159998" name="StdevRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
193 <userParam value="-12.467069" name="MeanRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
194 <userParam value="2.0159998" name="StdevRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
195 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
196 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9624" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
197 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
198 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9597" id="SIR_98">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
199 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep365" calculatedMassToCharge="374.7237548828125" experimentalMassToCharge="375.2268981933594" chargeState="2" id="SII_98_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
200 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931023_365_179"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
201 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931096_365_67"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
202 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931458_365_179"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
203 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2932034_365_179"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
204 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2932586_365_179"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
205 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2933094_365_179"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
206 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2933788_365_91"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
207 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-31" name="MS-GF:RawScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
208 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="12" name="MS-GF:DeNovoScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
209 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.007490085" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
210 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="83811.62" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
211 <userParam value="1" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
212 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
213 <userParam value="0.002810515" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
214 <userParam value="0.0010880833" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
215 <userParam value="0.0017224317" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
216 <userParam value="1322425.9" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
217 <userParam value="4" name="NumMatchedMainIons"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
218 <userParam value="10.769573" name="MeanErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
219 <userParam value="6.174447" name="StdevErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
220 <userParam value="10.769573" name="MeanErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
221 <userParam value="6.174447" name="StdevErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
222 <userParam value="-10.314375" name="MeanRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
223 <userParam value="6.908051" name="StdevRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
224 <userParam value="-10.314375" name="MeanRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
225 <userParam value="6.908051" name="StdevRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
226 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
227 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9597" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
228 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
229 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9535" id="SIR_36">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
230 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep366" calculatedMassToCharge="696.261962890625" experimentalMassToCharge="696.9315795898438" chargeState="3" id="SII_36_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
231 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13424467_366_233"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
232 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13424717_366_233"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
233 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-63" name="MS-GF:RawScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
234 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="57" name="MS-GF:DeNovoScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
235 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.009250706" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
236 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="120076.12" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
237 <userParam value="2" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
238 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
239 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
240 <userParam value="0.0" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
241 <userParam value="0.0" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
242 <userParam value="970208.1" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
243 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
244 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9535" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
245 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
246 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9536" id="SIR_37">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
247 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep367" calculatedMassToCharge="716.6107788085938" experimentalMassToCharge="716.2726440429688" chargeState="3" id="SII_37_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
248 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4045574_367_1163"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
249 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4046878_367_1210"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
250 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4047185_367_213"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
251 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4047445_367_166"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
252 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4048179_367_640"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
253 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4049204_367_814"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
254 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4049464_367_166"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
255 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4050765_367_1121"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
256 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-70" name="MS-GF:RawScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
257 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="58" name="MS-GF:DeNovoScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
258 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.01311507" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
259 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="168936.39" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
260 <userParam value="-1" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
261 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
262 <userParam value="0.021191442" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
263 <userParam value="0.021191442" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
264 <userParam value="0.0" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
265 <userParam value="458822.22" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
266 <userParam value="1" name="NumMatchedMainIons"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
267 <userParam value="7.1771297" name="MeanErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
268 <userParam value="0.0" name="StdevErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
269 <userParam value="7.1771297" name="MeanErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
270 <userParam value="0.0" name="StdevErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
271 <userParam value="7.1771297" name="MeanRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
272 <userParam value="0.0" name="StdevRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
273 <userParam value="7.1771297" name="MeanRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
274 <userParam value="0.0" name="StdevRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
275 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
276 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9536" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
277 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
278 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9562" id="SIR_63">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
279 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep368" calculatedMassToCharge="381.7315673828125" experimentalMassToCharge="382.2348937988281" chargeState="2" id="SII_63_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
280 <PeptideEvidenceRef peptideEvidence_ref="PepEv_23957849_368_59"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
281 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-37" name="MS-GF:RawScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
282 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="2" name="MS-GF:DeNovoScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
283 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.013180328" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
284 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="147483.58" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
285 <userParam value="1" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
286 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
287 <userParam value="0.029766617" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
288 <userParam value="0.0065177265" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
289 <userParam value="0.02324889" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
290 <userParam value="1004098.9" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
291 <userParam value="5" name="NumMatchedMainIons"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
292 <userParam value="6.8986616" name="MeanErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
293 <userParam value="3.4906154" name="StdevErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
294 <userParam value="6.8986616" name="MeanErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
295 <userParam value="3.4906154" name="StdevErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
296 <userParam value="-4.629228" name="MeanRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
297 <userParam value="6.192429" name="StdevRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
298 <userParam value="-4.629228" name="MeanRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
299 <userParam value="6.192429" name="StdevRelErrorTop7"/>
2
7a0951d0e13e planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 4ca7fcd1587c906db3314048a223d23b63b3f038
galaxyp
parents: 1
diff changeset
300 <userParam name="percolator:score" value="-1.147"/>
7a0951d0e13e planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 4ca7fcd1587c906db3314048a223d23b63b3f038
galaxyp
parents: 1
diff changeset
301 <userParam name="percolator:psm_p_value" value="0.000e+00"/>
1
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
302 <userParam name="percolator:psm_q_value" value="1.000e+00"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
303 <userParam name="percolator:psm_pep" value="1.000e+00"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
304 <userParam name="percolator:peptide_q_value" value="1.000e+00"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
305 <userParam name="percolator:peptide_pep" value="1.000e+00"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
306 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
307 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9562" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
308 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
309 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9802" id="SIR_303">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
310 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep369" calculatedMassToCharge="402.7550354003906" experimentalMassToCharge="403.25836181640625" chargeState="2" id="SII_303_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
311 <PeptideEvidenceRef peptideEvidence_ref="PepEv_20983112_369_271"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
312 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-38" name="MS-GF:RawScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
313 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="6" name="MS-GF:DeNovoScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
314 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.014048123" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
315 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="157193.92" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
316 <userParam value="1" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
317 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
318 <userParam value="0.022009742" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
319 <userParam value="0.0014010341" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
320 <userParam value="0.020608708" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
321 <userParam value="564391.6" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
322 <userParam value="4" name="NumMatchedMainIons"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
323 <userParam value="6.9542007" name="MeanErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
324 <userParam value="3.3916576" name="StdevErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
325 <userParam value="6.9542007" name="MeanErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
326 <userParam value="3.3916576" name="StdevErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
327 <userParam value="-3.5387955" name="MeanRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
328 <userParam value="6.8804927" name="StdevRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
329 <userParam value="-3.5387955" name="MeanRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
330 <userParam value="6.8804927" name="StdevRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
331 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
332 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9802" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
333 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
334 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9594" id="SIR_95">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
335 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep370" calculatedMassToCharge="397.7341003417969" experimentalMassToCharge="397.7373352050781" chargeState="2" id="SII_95_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
336 <PeptideEvidenceRef peptideEvidence_ref="PepEv_26265098_370_442"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
337 <PeptideEvidenceRef peptideEvidence_ref="PepEv_26265620_370_450"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
338 <PeptideEvidenceRef peptideEvidence_ref="PepEv_29673543_370_160"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
339 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32435502_370_1129"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
340 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-51" name="MS-GF:RawScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
341 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="13" name="MS-GF:DeNovoScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
342 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.021325951" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
343 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="238630.45" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
344 <userParam value="0" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
345 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
346 <userParam value="0.030569095" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
347 <userParam value="0.00203066" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
348 <userParam value="0.028538436" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
349 <userParam value="1176358.8" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
350 <userParam value="4" name="NumMatchedMainIons"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
351 <userParam value="7.255852" name="MeanErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
352 <userParam value="3.8946548" name="StdevErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
353 <userParam value="7.255852" name="MeanErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
354 <userParam value="3.8946548" name="StdevErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
355 <userParam value="-2.0970254" name="MeanRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
356 <userParam value="7.9635553" name="StdevRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
357 <userParam value="-2.0970254" name="MeanRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
358 <userParam value="7.9635553" name="StdevRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
359 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
360 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9594" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
361 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
362 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9681" id="SIR_182">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
363 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep371" calculatedMassToCharge="388.7393798828125" experimentalMassToCharge="389.2425537109375" chargeState="2" id="SII_182_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
364 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8122661_371_164"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
365 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8122856_371_29"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
366 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8123174_371_89"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
367 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8123331_371_113"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
368 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-63" name="MS-GF:RawScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
369 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="12" name="MS-GF:DeNovoScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
370 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.041115593" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
371 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="460070.12" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
372 <userParam value="1" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
373 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
374 <userParam value="0.0032015902" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
375 <userParam value="6.9299503E-4" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
376 <userParam value="0.0025085951" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
377 <userParam value="1018012.9" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
378 <userParam value="3" name="NumMatchedMainIons"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
379 <userParam value="9.696182" name="MeanErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
380 <userParam value="1.2990792" name="StdevErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
381 <userParam value="9.696182" name="MeanErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
382 <userParam value="1.2990792" name="StdevErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
383 <userParam value="-9.696182" name="MeanRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
384 <userParam value="1.2990792" name="StdevRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
385 <userParam value="-9.696182" name="MeanRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
386 <userParam value="1.2990792" name="StdevRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
387 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
388 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9681" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
389 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
390 </SpectrumIdentificationList>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
391 </AnalysisData>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
392 </DataCollection>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
galaxyp
parents:
diff changeset
393 </MzIdentML>