percolator: test-data/target_ds3_withperco.mzid annotate

author	galaxyp
date	Sat, 04 Mar 2017 20:36:03 -0500
parents
children	7a0951d0e13e

rev	line source
1 86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	1 <?xml version="1.0" encoding="UTF-8"?>
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86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	3 <cvList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
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86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	7 </cvList>
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86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	13 </AnalysisSoftware>
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86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	19 </SpectrumIdentification>
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86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	131 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9739" id="SIR_240">
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86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	141 <userParam value="0.04388853" name="ExplainedIonCurrentRatio"/>
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86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	175 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	176 <userParam value="0.022749394" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	177 <userParam value="0.0055547007" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	178 <userParam value="0.017194694" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	179 <userParam value="1108970.5" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	180 <userParam value="3" name="NumMatchedMainIons"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	181 <userParam value="12.467069" name="MeanErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	182 <userParam value="2.0159998" name="StdevErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	183 <userParam value="12.467069" name="MeanErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	184 <userParam value="2.0159998" name="StdevErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	185 <userParam value="-12.467069" name="MeanRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	186 <userParam value="2.0159998" name="StdevRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	187 <userParam value="-12.467069" name="MeanRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	188 <userParam value="2.0159998" name="StdevRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	189 </SpectrumIdentificationItem>
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86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	191 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	192 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9597" id="SIR_98">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	193 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep365" calculatedMassToCharge="374.7237548828125" experimentalMassToCharge="375.2268981933594" chargeState="2" id="SII_98_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	194 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931023_365_179"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	195 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931096_365_67"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	196 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931458_365_179"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	197 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2932034_365_179"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	198 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2932586_365_179"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	199 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2933094_365_179"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	200 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2933788_365_91"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	201 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-31" name="MS-GF:RawScore"/>
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86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	203 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.007490085" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	204 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="83811.62" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	205 <userParam value="1" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	206 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	207 <userParam value="0.002810515" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	208 <userParam value="0.0010880833" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	209 <userParam value="0.0017224317" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	210 <userParam value="1322425.9" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	211 <userParam value="4" name="NumMatchedMainIons"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	212 <userParam value="10.769573" name="MeanErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	213 <userParam value="6.174447" name="StdevErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	214 <userParam value="10.769573" name="MeanErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	215 <userParam value="6.174447" name="StdevErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	216 <userParam value="-10.314375" name="MeanRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	217 <userParam value="6.908051" name="StdevRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	218 <userParam value="-10.314375" name="MeanRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	219 <userParam value="6.908051" name="StdevRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	220 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	221 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9597" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	222 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	223 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9535" id="SIR_36">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	224 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep366" calculatedMassToCharge="696.261962890625" experimentalMassToCharge="696.9315795898438" chargeState="3" id="SII_36_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	225 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13424467_366_233"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	226 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13424717_366_233"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	227 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-63" name="MS-GF:RawScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	228 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="57" name="MS-GF:DeNovoScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	229 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.009250706" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	230 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="120076.12" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	231 <userParam value="2" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	232 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	233 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	234 <userParam value="0.0" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	235 <userParam value="0.0" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	236 <userParam value="970208.1" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	237 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	238 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9535" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	239 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	240 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9536" id="SIR_37">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	241 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep367" calculatedMassToCharge="716.6107788085938" experimentalMassToCharge="716.2726440429688" chargeState="3" id="SII_37_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	242 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4045574_367_1163"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	243 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4046878_367_1210"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	244 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4047185_367_213"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	245 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4047445_367_166"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	246 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4048179_367_640"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	247 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4049204_367_814"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	248 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4049464_367_166"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	249 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4050765_367_1121"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	250 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-70" name="MS-GF:RawScore"/>
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86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	253 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="168936.39" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	254 <userParam value="-1" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	255 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	256 <userParam value="0.021191442" name="ExplainedIonCurrentRatio"/>
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86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	342 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.021325951" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	343 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="238630.45" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	344 <userParam value="0" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	345 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	346 <userParam value="0.030569095" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	347 <userParam value="0.00203066" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	348 <userParam value="0.028538436" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	349 <userParam value="1176358.8" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	350 <userParam value="4" name="NumMatchedMainIons"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	351 <userParam value="7.255852" name="MeanErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	352 <userParam value="3.8946548" name="StdevErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	353 <userParam value="7.255852" name="MeanErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	354 <userParam value="3.8946548" name="StdevErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	355 <userParam value="-2.0970254" name="MeanRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	356 <userParam value="7.9635553" name="StdevRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	357 <userParam value="-2.0970254" name="MeanRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	358 <userParam value="7.9635553" name="StdevRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	359 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	360 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9594" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	361 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	362 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9681" id="SIR_182">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	363 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep371" calculatedMassToCharge="388.7393798828125" experimentalMassToCharge="389.2425537109375" chargeState="2" id="SII_182_1">
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	364 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8122661_371_164"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	365 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8122856_371_29"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	366 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8123174_371_89"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	367 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8123331_371_113"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	368 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-63" name="MS-GF:RawScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	369 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="12" name="MS-GF:DeNovoScore"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	370 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.041115593" name="MS-GF:SpecEValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	371 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="460070.12" name="MS-GF:EValue"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	372 <userParam value="1" name="IsotopeError"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	373 <userParam value="HCD" name="AssumedDissociationMethod"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	374 <userParam value="0.0032015902" name="ExplainedIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	375 <userParam value="6.9299503E-4" name="NTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	376 <userParam value="0.0025085951" name="CTermIonCurrentRatio"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	377 <userParam value="1018012.9" name="MS2IonCurrent"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	378 <userParam value="3" name="NumMatchedMainIons"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	379 <userParam value="9.696182" name="MeanErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	380 <userParam value="1.2990792" name="StdevErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	381 <userParam value="9.696182" name="MeanErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	382 <userParam value="1.2990792" name="StdevErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	383 <userParam value="-9.696182" name="MeanRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	384 <userParam value="1.2990792" name="StdevRelErrorAll"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	385 <userParam value="-9.696182" name="MeanRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	386 <userParam value="1.2990792" name="StdevRelErrorTop7"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	387 </SpectrumIdentificationItem>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	388 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9681" name="scan number(s)"/>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	389 </SpectrumIdentificationResult>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	390 </SpectrumIdentificationList>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	391 </AnalysisData>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	392 </DataCollection>
86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c galaxyp parents: diff changeset	393 </MzIdentML>

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1 <?xml version="1.0" encoding="UTF-8"?>

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2 <MzIdentML id="MS-GF+" version="1.1.0" xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" creationDate="2017-03-01T15:00:34" >

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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3 <cvList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">

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4 <cv id="PSI-MS" uri="http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo" version="3.30.0" fullName="PSI-MS"/>

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5 <cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" fullName="UNIMOD"/>

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6 <cv id="UO" uri="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo" fullName="UNIT-ONTOLOGY"/>

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7 </cvList>

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8 <AnalysisSoftwareList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">

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9 <AnalysisSoftware version="Beta (v10072)" name="MS-GF+" id="ID_software">

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10 <SoftwareName>

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11 <cvParam accession="MS:1002048" cvRef="PSI-MS" name="MS-GF+"/>

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12 </SoftwareName>

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13 </AnalysisSoftware>

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14 </AnalysisSoftwareList>

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15 <AnalysisCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">

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16 <SpectrumIdentification spectrumIdentificationList_ref="SI_LIST_1" spectrumIdentificationProtocol_ref="SearchProtocol_1" id="SpecIdent_1">

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17 <InputSpectra spectraData_ref="SID_1"/>

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18 <SearchDatabaseRef searchDatabase_ref="SearchDB_1"/>

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19 </SpectrumIdentification>

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20 </AnalysisCollection>

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21 <AnalysisProtocolCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">

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22 <SpectrumIdentificationProtocol analysisSoftware_ref="ID_software" id="SearchProtocol_1">

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23 <SearchType>

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24 <cvParam accession="MS:1001083" cvRef="PSI-MS" name="ms-ms search"/>

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25 </SearchType>

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26 <AdditionalSearchParams>

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27 <cvParam accession="MS:1001211" cvRef="PSI-MS" name="parent mass type mono"/>

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28 <cvParam accession="MS:1001256" cvRef="PSI-MS" name="fragment mass type mono"/>

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29 <userParam value="false" name="TargetDecoyApproach"/>

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30 <userParam value="-1" name="MinIsotopeError"/>

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31 <userParam value="2" name="MaxIsotopeError"/>

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32 <userParam value="HCD" name="FragmentMethod"/>

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33 <userParam value="QExactive" name="Instrument"/>

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34 <userParam value="TMT" name="Protocol"/>

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35 <userParam value="2" name="NumTolerableTermini"/>

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36 <userParam value="1" name="NumMatchesPerSpec"/>

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37 <userParam value="2" name="MaxNumModifications"/>

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38 <userParam value="6" name="MinPepLength"/>

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39 <userParam value="50" name="MaxPepLength"/>

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40 <userParam value="2" name="MinCharge"/>

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41 <userParam value="6" name="MaxCharge"/>

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42 </AdditionalSearchParams>

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43 <ModificationParams>

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44 <SearchModification residues="M" massDelta="15.994915" fixedMod="false">

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45 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>

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46 </SearchModification>

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47 <SearchModification residues="C" massDelta="57.021465" fixedMod="true">

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48 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>

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49 </SearchModification>

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50 <SearchModification residues="K" massDelta="229.16293" fixedMod="true">

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51 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>

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52 </SearchModification>

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53 <SearchModification residues="." massDelta="229.16293" fixedMod="true">

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54 <SpecificityRules>

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55 <cvParam accession="MS:1001189" cvRef="PSI-MS" name="modification specificity N-term"/>

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56 </SpecificityRules>

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57 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>

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58 </SearchModification>

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59 </ModificationParams>

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60 <Enzymes>

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61 <Enzyme missedCleavages="1000" semiSpecific="false" id="Tryp">

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62 <EnzymeName>

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63 <cvParam accession="MS:1001251" cvRef="PSI-MS" name="Trypsin"/>

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64 </EnzymeName>

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65 </Enzyme>

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66 </Enzymes>

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67 <ParentTolerance>

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68 <cvParam accession="MS:1001412" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance plus value"/>

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69 <cvParam accession="MS:1001413" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance minus value"/>

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70 </ParentTolerance>

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71 <Threshold>

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72 <cvParam accession="MS:1001494" cvRef="PSI-MS" name="no threshold"/>

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73 </Threshold>

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74 </SpectrumIdentificationProtocol>

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75 </AnalysisProtocolCollection>

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76 <DataCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">

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77 <Inputs>

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78 <SearchDatabase numDatabaseSequences="102915" location="/mnt/galaxy/data/job_working_directory/000/235/235188/working/dbase.fasta" id="SearchDB_1">

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79 <FileFormat>

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80 <cvParam accession="MS:1001348" cvRef="PSI-MS" name="FASTA format"/>

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81 </FileFormat>

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82 <DatabaseName>

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83 <userParam name="dbase.fasta"/>

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84 </DatabaseName>

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85 </SearchDatabase>

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86 <SpectraData location="/tmp/tmp_OeEkM/dataset_362460.dat.mzml" name="dataset_362460.dat.mzml" id="SID_1">

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87 <FileFormat>

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88 <cvParam accession="MS:1000584" cvRef="PSI-MS" name="mzML file"/>

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89 </FileFormat>

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90 <SpectrumIDFormat>

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91 <cvParam accession="MS:1000768" cvRef="PSI-MS" name="Thermo nativeID format"/>

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92 </SpectrumIDFormat>

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93 </SpectraData>

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94 </Inputs>

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95 <AnalysisData>

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96 <SpectrumIdentificationList id="SI_LIST_1">

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97 <FragmentationTable>

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98 <Measure id="Measure_MZ">

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99 <cvParam accession="MS:1001225" cvRef="PSI-MS" unitCvRef="PSI-MS" unitName="m/z" unitAccession="MS:1000040" name="product ion m/z"/>

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100 </Measure>

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101 </FragmentationTable>

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102 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9576" id="SIR_77">

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103 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep362" calculatedMassToCharge="420.2504577636719" experimentalMassToCharge="419.74969482421875" chargeState="2" id="SII_77_1">

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104 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31443849_362_176"/>

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105 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31444212_362_184"/>

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106 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31444767_362_176"/>

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107 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31445005_362_193"/>

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108 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31445234_362_184"/>

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109 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-35" name="MS-GF:RawScore"/>

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110 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="1" name="MS-GF:DeNovoScore"/>

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111 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0038289425" name="MS-GF:SpecEValue"/>

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112 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="42844.62" name="MS-GF:EValue"/>

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113 <userParam value="-1" name="IsotopeError"/>

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114 <userParam value="HCD" name="AssumedDissociationMethod"/>

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115 <userParam value="0.008446768" name="ExplainedIonCurrentRatio"/>

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116 <userParam value="0.0048889467" name="NTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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117 <userParam value="0.003557821" name="CTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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118 <userParam value="979701.5" name="MS2IonCurrent"/>

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119 <userParam value="4" name="NumMatchedMainIons"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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120 <userParam value="7.9951363" name="MeanErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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121 <userParam value="4.7648582" name="StdevErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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122 <userParam value="7.9951363" name="MeanErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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123 <userParam value="4.7648582" name="StdevErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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124 <userParam value="0.79569435" name="MeanRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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125 <userParam value="9.273238" name="StdevRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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126 <userParam value="0.79569435" name="MeanRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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127 <userParam value="9.273238" name="StdevRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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128 </SpectrumIdentificationItem>

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129 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9576" name="scan number(s)"/>

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130 </SpectrumIdentificationResult>

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131 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9739" id="SIR_240">

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132 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep363" calculatedMassToCharge="1044.435546875" experimentalMassToCharge="1045.4466552734375" chargeState="2" id="SII_240_1">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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133 <PeptideEvidenceRef peptideEvidence_ref="PepEv_36274231_363_1"/>

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134 <PeptideEvidenceRef peptideEvidence_ref="PepEv_36275421_363_1"/>

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135 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-75" name="MS-GF:RawScore"/>

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136 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="203" name="MS-GF:DeNovoScore"/>

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137 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0039381883" name="MS-GF:SpecEValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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138 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="49910.527" name="MS-GF:EValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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139 <userParam value="2" name="IsotopeError"/>

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140 <userParam value="HCD" name="AssumedDissociationMethod"/>

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141 <userParam value="0.04388853" name="ExplainedIonCurrentRatio"/>

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142 <userParam value="0.0018504228" name="NTermIonCurrentRatio"/>

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143 <userParam value="0.04203811" name="CTermIonCurrentRatio"/>

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144 <userParam value="211725.44" name="MS2IonCurrent"/>

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145 <userParam value="3" name="NumMatchedMainIons"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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146 <userParam value="5.0645747" name="MeanErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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147 <userParam value="4.3375416" name="StdevErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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148 <userParam value="5.0645747" name="MeanErrorTop7"/>

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149 <userParam value="4.3375416" name="StdevErrorTop7"/>

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150 <userParam value="-5.0645747" name="MeanRelErrorAll"/>

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151 <userParam value="4.3375416" name="StdevRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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152 <userParam value="-5.0645747" name="MeanRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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153 <userParam value="4.3375416" name="StdevRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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154 </SpectrumIdentificationItem>

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155 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9739" name="scan number(s)"/>

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156 </SpectrumIdentificationResult>

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157 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9624" id="SIR_125">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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158 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep364" calculatedMassToCharge="412.7393798828125" experimentalMassToCharge="412.7425537109375" chargeState="2" id="SII_125_1">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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159 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2217873_364_124"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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160 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2218487_364_118"/>

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161 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2219651_364_124"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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162 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2220892_364_124"/>

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163 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2221016_364_118"/>

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164 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2222191_364_118"/>

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165 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2223367_364_124"/>

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166 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2223824_364_94"/>

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167 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2224990_364_94"/>

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168 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2226818_364_124"/>

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169 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2228053_364_118"/>

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170 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-36" name="MS-GF:RawScore"/>

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171 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="7" name="MS-GF:DeNovoScore"/>

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172 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0041994834" name="MS-GF:SpecEValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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173 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="46990.855" name="MS-GF:EValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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174 <userParam value="0" name="IsotopeError"/>

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175 <userParam value="HCD" name="AssumedDissociationMethod"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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176 <userParam value="0.022749394" name="ExplainedIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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177 <userParam value="0.0055547007" name="NTermIonCurrentRatio"/>

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178 <userParam value="0.017194694" name="CTermIonCurrentRatio"/>

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179 <userParam value="1108970.5" name="MS2IonCurrent"/>

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180 <userParam value="3" name="NumMatchedMainIons"/>

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181 <userParam value="12.467069" name="MeanErrorAll"/>

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182 <userParam value="2.0159998" name="StdevErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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183 <userParam value="12.467069" name="MeanErrorTop7"/>

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184 <userParam value="2.0159998" name="StdevErrorTop7"/>

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185 <userParam value="-12.467069" name="MeanRelErrorAll"/>

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186 <userParam value="2.0159998" name="StdevRelErrorAll"/>

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187 <userParam value="-12.467069" name="MeanRelErrorTop7"/>

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188 <userParam value="2.0159998" name="StdevRelErrorTop7"/>

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189 </SpectrumIdentificationItem>

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190 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9624" name="scan number(s)"/>

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191 </SpectrumIdentificationResult>

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192 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9597" id="SIR_98">

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193 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep365" calculatedMassToCharge="374.7237548828125" experimentalMassToCharge="375.2268981933594" chargeState="2" id="SII_98_1">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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194 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931023_365_179"/>

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195 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931096_365_67"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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196 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931458_365_179"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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197 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2932034_365_179"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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198 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2932586_365_179"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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199 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2933094_365_179"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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200 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2933788_365_91"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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201 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-31" name="MS-GF:RawScore"/>

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202 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="12" name="MS-GF:DeNovoScore"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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203 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.007490085" name="MS-GF:SpecEValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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204 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="83811.62" name="MS-GF:EValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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205 <userParam value="1" name="IsotopeError"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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206 <userParam value="HCD" name="AssumedDissociationMethod"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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207 <userParam value="0.002810515" name="ExplainedIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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208 <userParam value="0.0010880833" name="NTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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209 <userParam value="0.0017224317" name="CTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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210 <userParam value="1322425.9" name="MS2IonCurrent"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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211 <userParam value="4" name="NumMatchedMainIons"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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212 <userParam value="10.769573" name="MeanErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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213 <userParam value="6.174447" name="StdevErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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214 <userParam value="10.769573" name="MeanErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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215 <userParam value="6.174447" name="StdevErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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216 <userParam value="-10.314375" name="MeanRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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217 <userParam value="6.908051" name="StdevRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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218 <userParam value="-10.314375" name="MeanRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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219 <userParam value="6.908051" name="StdevRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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220 </SpectrumIdentificationItem>

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221 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9597" name="scan number(s)"/>

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222 </SpectrumIdentificationResult>

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223 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9535" id="SIR_36">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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224 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep366" calculatedMassToCharge="696.261962890625" experimentalMassToCharge="696.9315795898438" chargeState="3" id="SII_36_1">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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225 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13424467_366_233"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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226 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13424717_366_233"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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227 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-63" name="MS-GF:RawScore"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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228 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="57" name="MS-GF:DeNovoScore"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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229 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.009250706" name="MS-GF:SpecEValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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230 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="120076.12" name="MS-GF:EValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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231 <userParam value="2" name="IsotopeError"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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232 <userParam value="HCD" name="AssumedDissociationMethod"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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233 <userParam value="0.0" name="ExplainedIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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234 <userParam value="0.0" name="NTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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235 <userParam value="0.0" name="CTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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236 <userParam value="970208.1" name="MS2IonCurrent"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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237 </SpectrumIdentificationItem>

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diff changeset

238 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9535" name="scan number(s)"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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239 </SpectrumIdentificationResult>

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240 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9536" id="SIR_37">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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241 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep367" calculatedMassToCharge="716.6107788085938" experimentalMassToCharge="716.2726440429688" chargeState="3" id="SII_37_1">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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242 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4045574_367_1163"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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243 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4046878_367_1210"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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244 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4047185_367_213"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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245 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4047445_367_166"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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246 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4048179_367_640"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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247 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4049204_367_814"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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248 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4049464_367_166"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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249 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4050765_367_1121"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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250 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-70" name="MS-GF:RawScore"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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251 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="58" name="MS-GF:DeNovoScore"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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252 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.01311507" name="MS-GF:SpecEValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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253 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="168936.39" name="MS-GF:EValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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254 <userParam value="-1" name="IsotopeError"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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255 <userParam value="HCD" name="AssumedDissociationMethod"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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parents:

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256 <userParam value="0.021191442" name="ExplainedIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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257 <userParam value="0.021191442" name="NTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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258 <userParam value="0.0" name="CTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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259 <userParam value="458822.22" name="MS2IonCurrent"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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260 <userParam value="1" name="NumMatchedMainIons"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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261 <userParam value="7.1771297" name="MeanErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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262 <userParam value="0.0" name="StdevErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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263 <userParam value="7.1771297" name="MeanErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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264 <userParam value="0.0" name="StdevErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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265 <userParam value="7.1771297" name="MeanRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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266 <userParam value="0.0" name="StdevRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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267 <userParam value="7.1771297" name="MeanRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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268 <userParam value="0.0" name="StdevRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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269 <userParam name="percolator:score" value="-1.307"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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270 <userParam name="percolator:psm_p_value" value="8.449e-01"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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271 <userParam name="percolator:psm_q_value" value="1.000e+00"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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272 <userParam name="percolator:psm_pep" value="1.000e+00"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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273 <userParam name="percolator:peptide_q_value" value="1.000e+00"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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274 <userParam name="percolator:peptide_pep" value="1.000e+00"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

275 </SpectrumIdentificationItem>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

276 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9536" name="scan number(s)"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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277 </SpectrumIdentificationResult>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

278 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9562" id="SIR_63">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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279 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep368" calculatedMassToCharge="381.7315673828125" experimentalMassToCharge="382.2348937988281" chargeState="2" id="SII_63_1">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

280 <PeptideEvidenceRef peptideEvidence_ref="PepEv_23957849_368_59"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

281 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-37" name="MS-GF:RawScore"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

282 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="2" name="MS-GF:DeNovoScore"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

283 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.013180328" name="MS-GF:SpecEValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

284 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="147483.58" name="MS-GF:EValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

285 <userParam value="1" name="IsotopeError"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

286 <userParam value="HCD" name="AssumedDissociationMethod"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

287 <userParam value="0.029766617" name="ExplainedIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

288 <userParam value="0.0065177265" name="NTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

289 <userParam value="0.02324889" name="CTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

290 <userParam value="1004098.9" name="MS2IonCurrent"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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291 <userParam value="5" name="NumMatchedMainIons"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

292 <userParam value="6.8986616" name="MeanErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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293 <userParam value="3.4906154" name="StdevErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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294 <userParam value="6.8986616" name="MeanErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

295 <userParam value="3.4906154" name="StdevErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

296 <userParam value="-4.629228" name="MeanRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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parents:

diff changeset

297 <userParam value="6.192429" name="StdevRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

298 <userParam value="-4.629228" name="MeanRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

299 <userParam value="6.192429" name="StdevRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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300 </SpectrumIdentificationItem>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

301 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9562" name="scan number(s)"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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302 </SpectrumIdentificationResult>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

303 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9802" id="SIR_303">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

304 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep369" calculatedMassToCharge="402.7550354003906" experimentalMassToCharge="403.25836181640625" chargeState="2" id="SII_303_1">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

305 <PeptideEvidenceRef peptideEvidence_ref="PepEv_20983112_369_271"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

306 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-38" name="MS-GF:RawScore"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

307 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="6" name="MS-GF:DeNovoScore"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

308 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.014048123" name="MS-GF:SpecEValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

309 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="157193.92" name="MS-GF:EValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

310 <userParam value="1" name="IsotopeError"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

311 <userParam value="HCD" name="AssumedDissociationMethod"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

galaxyp

parents:

diff changeset

312 <userParam value="0.022009742" name="ExplainedIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

galaxyp

parents:

diff changeset

313 <userParam value="0.0014010341" name="NTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

galaxyp

parents:

diff changeset

314 <userParam value="0.020608708" name="CTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

galaxyp

parents:

diff changeset

315 <userParam value="564391.6" name="MS2IonCurrent"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

316 <userParam value="4" name="NumMatchedMainIons"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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parents:

diff changeset

317 <userParam value="6.9542007" name="MeanErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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parents:

diff changeset

318 <userParam value="3.3916576" name="StdevErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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parents:

diff changeset

319 <userParam value="6.9542007" name="MeanErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

galaxyp

parents:

diff changeset

320 <userParam value="3.3916576" name="StdevErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

galaxyp

parents:

diff changeset

321 <userParam value="-3.5387955" name="MeanRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

galaxyp

parents:

diff changeset

322 <userParam value="6.8804927" name="StdevRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

galaxyp

parents:

diff changeset

323 <userParam value="-3.5387955" name="MeanRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

galaxyp

parents:

diff changeset

324 <userParam value="6.8804927" name="StdevRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

325 <userParam name="percolator:score" value="-1.42"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

326 <userParam name="percolator:psm_p_value" value="9.186e-01"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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327 <userParam name="percolator:psm_q_value" value="1.000e+00"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

328 <userParam name="percolator:psm_pep" value="1.000e+00"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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329 <userParam name="percolator:peptide_q_value" value="1.000e+00"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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330 <userParam name="percolator:peptide_pep" value="1.000e+00"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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331 </SpectrumIdentificationItem>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

332 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9802" name="scan number(s)"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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333 </SpectrumIdentificationResult>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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334 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9594" id="SIR_95">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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335 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep370" calculatedMassToCharge="397.7341003417969" experimentalMassToCharge="397.7373352050781" chargeState="2" id="SII_95_1">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

336 <PeptideEvidenceRef peptideEvidence_ref="PepEv_26265098_370_442"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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337 <PeptideEvidenceRef peptideEvidence_ref="PepEv_26265620_370_450"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

338 <PeptideEvidenceRef peptideEvidence_ref="PepEv_29673543_370_160"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

339 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32435502_370_1129"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

340 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-51" name="MS-GF:RawScore"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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341 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="13" name="MS-GF:DeNovoScore"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

342 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.021325951" name="MS-GF:SpecEValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

343 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="238630.45" name="MS-GF:EValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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344 <userParam value="0" name="IsotopeError"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

345 <userParam value="HCD" name="AssumedDissociationMethod"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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parents:

diff changeset

346 <userParam value="0.030569095" name="ExplainedIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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parents:

diff changeset

347 <userParam value="0.00203066" name="NTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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parents:

diff changeset

348 <userParam value="0.028538436" name="CTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

349 <userParam value="1176358.8" name="MS2IonCurrent"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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350 <userParam value="4" name="NumMatchedMainIons"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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parents:

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351 <userParam value="7.255852" name="MeanErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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352 <userParam value="3.8946548" name="StdevErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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353 <userParam value="7.255852" name="MeanErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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354 <userParam value="3.8946548" name="StdevErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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355 <userParam value="-2.0970254" name="MeanRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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356 <userParam value="7.9635553" name="StdevRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

357 <userParam value="-2.0970254" name="MeanRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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358 <userParam value="7.9635553" name="StdevRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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359 </SpectrumIdentificationItem>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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360 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9594" name="scan number(s)"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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361 </SpectrumIdentificationResult>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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362 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9681" id="SIR_182">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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363 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep371" calculatedMassToCharge="388.7393798828125" experimentalMassToCharge="389.2425537109375" chargeState="2" id="SII_182_1">

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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364 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8122661_371_164"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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365 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8122856_371_29"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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366 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8123174_371_89"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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367 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8123331_371_113"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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368 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-63" name="MS-GF:RawScore"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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369 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="12" name="MS-GF:DeNovoScore"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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370 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.041115593" name="MS-GF:SpecEValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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371 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="460070.12" name="MS-GF:EValue"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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372 <userParam value="1" name="IsotopeError"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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373 <userParam value="HCD" name="AssumedDissociationMethod"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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374 <userParam value="0.0032015902" name="ExplainedIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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375 <userParam value="6.9299503E-4" name="NTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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376 <userParam value="0.0025085951" name="CTermIonCurrentRatio"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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377 <userParam value="1018012.9" name="MS2IonCurrent"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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378 <userParam value="3" name="NumMatchedMainIons"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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379 <userParam value="9.696182" name="MeanErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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380 <userParam value="1.2990792" name="StdevErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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381 <userParam value="9.696182" name="MeanErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

382 <userParam value="1.2990792" name="StdevErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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383 <userParam value="-9.696182" name="MeanRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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384 <userParam value="1.2990792" name="StdevRelErrorAll"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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diff changeset

385 <userParam value="-9.696182" name="MeanRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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386 <userParam value="1.2990792" name="StdevRelErrorTop7"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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387 </SpectrumIdentificationItem>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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388 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9681" name="scan number(s)"/>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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389 </SpectrumIdentificationResult>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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390 </SpectrumIdentificationList>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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391 </AnalysisData>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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392 </DataCollection>

86770eea5b09 planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c

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393 </MzIdentML>

Mercurial > repos > galaxyp > percolator

annotate test-data/target_ds3_withperco.mzid @ 1:86770eea5b09 draft