Mercurial > repos > galaxyp > percolator
comparison percolator.xml @ 1:86770eea5b09 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
| author | galaxyp |
|---|---|
| date | Sat, 04 Mar 2017 20:36:03 -0500 |
| parents | 3a49065a05d6 |
| children | 7a0951d0e13e |
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| 0:3a49065a05d6 | 1:86770eea5b09 |
|---|---|
| 1 <tool id="percolator" name="Percolator" version="3.0"> | 1 <tool id="percolator" name="Percolator" version="3.0.1"> |
| 2 <description>accurate peptide identification</description> | 2 <description>accurate peptide identification</description> |
| 3 <requirements> | 3 <requirements> |
| 4 <requirement type="package" version="3.0">percolator</requirement> | 4 <requirement type="package" version="3.0">percolator</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 <stdio> | 6 <stdio> |
| 37 $quickval $unitnorm $override $onlypsms | 37 $quickval $unitnorm $override $onlypsms |
| 38 </command> | 38 </command> |
| 39 <inputs> | 39 <inputs> |
| 40 <param name="output_type" label="What filetype to output" type="select" display="radio"> | 40 <param name="output_type" label="What filetype to output" type="select" display="radio"> |
| 41 <option value="xml" selected="true">percolator XML (for further processing)</option> | 41 <option value="xml" selected="true">percolator XML (for further processing)</option> |
| 42 <option value="tsv">Tab-separated</option> | 42 <option value="tsv">Tab-separated</option> |
| 43 </param> | 43 </param> |
| 44 <param name="input" type="data" format="percin" label="Percolator input data" /> | 44 <param name="input" type="data" format="percin" label="Percolator input data" /> |
| 45 <param name="cpos" label="Penalty for mistakes on positive examples" type="float" optional="true" /> | 45 <param name="cpos" label="Penalty for mistakes on positive examples" type="float" optional="true" /> |
| 46 <param name="cneg" label="Penalty for mistakes on negative examples" type="float" optional="true" /> | 46 <param name="cneg" label="Penalty for mistakes on negative examples" type="float" optional="true" /> |
| 47 <param name="trainfdr" label="FDR threshold to define positive examples" type="float" optional="true" help="Set by cross validation if 0."/> | 47 <param name="trainfdr" label="FDR threshold to define positive examples" type="float" optional="true" help="Set by cross validation if 0."/> |