Mercurial > repos > galaxyp > percolator
comparison test-data/target_ds2_withperco.mzid @ 1:86770eea5b09 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit 0a5f9eb82877545be1c924357e585b17e01cfd1c
| author | galaxyp |
|---|---|
| date | Sat, 04 Mar 2017 20:36:03 -0500 |
| parents | |
| children | 7a0951d0e13e |
comparison
equal
deleted
inserted
replaced
| 0:3a49065a05d6 | 1:86770eea5b09 |
|---|---|
| 1 <?xml version="1.0" encoding="UTF-8"?> | |
| 2 <MzIdentML id="MS-GF+" version="1.1.0" xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" creationDate="2017-03-01T15:00:34" > | |
| 3 <cvList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> | |
| 4 <cv id="PSI-MS" uri="http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo" version="3.30.0" fullName="PSI-MS"/> | |
| 5 <cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" fullName="UNIMOD"/> | |
| 6 <cv id="UO" uri="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo" fullName="UNIT-ONTOLOGY"/> | |
| 7 </cvList> | |
| 8 <AnalysisSoftwareList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> | |
| 9 <AnalysisSoftware version="Beta (v10072)" name="MS-GF+" id="ID_software"> | |
| 10 <SoftwareName> | |
| 11 <cvParam accession="MS:1002048" cvRef="PSI-MS" name="MS-GF+"/> | |
| 12 </SoftwareName> | |
| 13 </AnalysisSoftware> | |
| 14 </AnalysisSoftwareList> | |
| 15 <AnalysisCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> | |
| 16 <SpectrumIdentification spectrumIdentificationList_ref="SI_LIST_1" spectrumIdentificationProtocol_ref="SearchProtocol_1" id="SpecIdent_1"> | |
| 17 <InputSpectra spectraData_ref="SID_1"/> | |
| 18 <SearchDatabaseRef searchDatabase_ref="SearchDB_1"/> | |
| 19 </SpectrumIdentification> | |
| 20 </AnalysisCollection> | |
| 21 <AnalysisProtocolCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> | |
| 22 <SpectrumIdentificationProtocol analysisSoftware_ref="ID_software" id="SearchProtocol_1"> | |
| 23 <SearchType> | |
| 24 <cvParam accession="MS:1001083" cvRef="PSI-MS" name="ms-ms search"/> | |
| 25 </SearchType> | |
| 26 <AdditionalSearchParams> | |
| 27 <cvParam accession="MS:1001211" cvRef="PSI-MS" name="parent mass type mono"/> | |
| 28 <cvParam accession="MS:1001256" cvRef="PSI-MS" name="fragment mass type mono"/> | |
| 29 <userParam value="false" name="TargetDecoyApproach"/> | |
| 30 <userParam value="-1" name="MinIsotopeError"/> | |
| 31 <userParam value="2" name="MaxIsotopeError"/> | |
| 32 <userParam value="HCD" name="FragmentMethod"/> | |
| 33 <userParam value="QExactive" name="Instrument"/> | |
| 34 <userParam value="TMT" name="Protocol"/> | |
| 35 <userParam value="2" name="NumTolerableTermini"/> | |
| 36 <userParam value="1" name="NumMatchesPerSpec"/> | |
| 37 <userParam value="2" name="MaxNumModifications"/> | |
| 38 <userParam value="6" name="MinPepLength"/> | |
| 39 <userParam value="50" name="MaxPepLength"/> | |
| 40 <userParam value="2" name="MinCharge"/> | |
| 41 <userParam value="6" name="MaxCharge"/> | |
| 42 </AdditionalSearchParams> | |
| 43 <ModificationParams> | |
| 44 <SearchModification residues="M" massDelta="15.994915" fixedMod="false"> | |
| 45 <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/> | |
| 46 </SearchModification> | |
| 47 <SearchModification residues="C" massDelta="57.021465" fixedMod="true"> | |
| 48 <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/> | |
| 49 </SearchModification> | |
| 50 <SearchModification residues="K" massDelta="229.16293" fixedMod="true"> | |
| 51 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> | |
| 52 </SearchModification> | |
| 53 <SearchModification residues="." massDelta="229.16293" fixedMod="true"> | |
| 54 <SpecificityRules> | |
| 55 <cvParam accession="MS:1001189" cvRef="PSI-MS" name="modification specificity N-term"/> | |
| 56 </SpecificityRules> | |
| 57 <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/> | |
| 58 </SearchModification> | |
| 59 </ModificationParams> | |
| 60 <Enzymes> | |
| 61 <Enzyme missedCleavages="1000" semiSpecific="false" id="Tryp"> | |
| 62 <EnzymeName> | |
| 63 <cvParam accession="MS:1001251" cvRef="PSI-MS" name="Trypsin"/> | |
| 64 </EnzymeName> | |
| 65 </Enzyme> | |
| 66 </Enzymes> | |
| 67 <ParentTolerance> | |
| 68 <cvParam accession="MS:1001412" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance plus value"/> | |
| 69 <cvParam accession="MS:1001413" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance minus value"/> | |
| 70 </ParentTolerance> | |
| 71 <Threshold> | |
| 72 <cvParam accession="MS:1001494" cvRef="PSI-MS" name="no threshold"/> | |
| 73 </Threshold> | |
| 74 </SpectrumIdentificationProtocol> | |
| 75 </AnalysisProtocolCollection> | |
| 76 <DataCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"> | |
| 77 <Inputs> | |
| 78 <SearchDatabase numDatabaseSequences="102915" location="/mnt/galaxy/data/job_working_directory/000/235/235188/working/dbase.fasta" id="SearchDB_1"> | |
| 79 <FileFormat> | |
| 80 <cvParam accession="MS:1001348" cvRef="PSI-MS" name="FASTA format"/> | |
| 81 </FileFormat> | |
| 82 <DatabaseName> | |
| 83 <userParam name="dbase.fasta"/> | |
| 84 </DatabaseName> | |
| 85 </SearchDatabase> | |
| 86 <SpectraData location="/tmp/tmp_OeEkM/dataset_362460.dat.mzml" name="dataset_362460.dat.mzml" id="SID_1"> | |
| 87 <FileFormat> | |
| 88 <cvParam accession="MS:1000584" cvRef="PSI-MS" name="mzML file"/> | |
| 89 </FileFormat> | |
| 90 <SpectrumIDFormat> | |
| 91 <cvParam accession="MS:1000768" cvRef="PSI-MS" name="Thermo nativeID format"/> | |
| 92 </SpectrumIDFormat> | |
| 93 </SpectraData> | |
| 94 </Inputs> | |
| 95 <AnalysisData> | |
| 96 <SpectrumIdentificationList id="SI_LIST_1"> | |
| 97 <FragmentationTable> | |
| 98 <Measure id="Measure_MZ"> | |
| 99 <cvParam accession="MS:1001225" cvRef="PSI-MS" unitCvRef="PSI-MS" unitName="m/z" unitAccession="MS:1000040" name="product ion m/z"/> | |
| 100 </Measure> | |
| 101 </FragmentationTable> | |
| 102 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9576" id="SIR_77"> | |
| 103 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep362" calculatedMassToCharge="420.2504577636719" experimentalMassToCharge="419.74969482421875" chargeState="2" id="SII_77_1"> | |
| 104 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31443849_362_176"/> | |
| 105 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31444212_362_184"/> | |
| 106 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31444767_362_176"/> | |
| 107 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31445005_362_193"/> | |
| 108 <PeptideEvidenceRef peptideEvidence_ref="PepEv_31445234_362_184"/> | |
| 109 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-35" name="MS-GF:RawScore"/> | |
| 110 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="1" name="MS-GF:DeNovoScore"/> | |
| 111 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0038289425" name="MS-GF:SpecEValue"/> | |
| 112 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="42844.62" name="MS-GF:EValue"/> | |
| 113 <userParam value="-1" name="IsotopeError"/> | |
| 114 <userParam value="HCD" name="AssumedDissociationMethod"/> | |
| 115 <userParam value="0.008446768" name="ExplainedIonCurrentRatio"/> | |
| 116 <userParam value="0.0048889467" name="NTermIonCurrentRatio"/> | |
| 117 <userParam value="0.003557821" name="CTermIonCurrentRatio"/> | |
| 118 <userParam value="979701.5" name="MS2IonCurrent"/> | |
| 119 <userParam value="4" name="NumMatchedMainIons"/> | |
| 120 <userParam value="7.9951363" name="MeanErrorAll"/> | |
| 121 <userParam value="4.7648582" name="StdevErrorAll"/> | |
| 122 <userParam value="7.9951363" name="MeanErrorTop7"/> | |
| 123 <userParam value="4.7648582" name="StdevErrorTop7"/> | |
| 124 <userParam value="0.79569435" name="MeanRelErrorAll"/> | |
| 125 <userParam value="9.273238" name="StdevRelErrorAll"/> | |
| 126 <userParam value="0.79569435" name="MeanRelErrorTop7"/> | |
| 127 <userParam value="9.273238" name="StdevRelErrorTop7"/> | |
| 128 </SpectrumIdentificationItem> | |
| 129 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9576" name="scan number(s)"/> | |
| 130 </SpectrumIdentificationResult> | |
| 131 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9739" id="SIR_240"> | |
| 132 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep363" calculatedMassToCharge="1044.435546875" experimentalMassToCharge="1045.4466552734375" chargeState="2" id="SII_240_1"> | |
| 133 <PeptideEvidenceRef peptideEvidence_ref="PepEv_36274231_363_1"/> | |
| 134 <PeptideEvidenceRef peptideEvidence_ref="PepEv_36275421_363_1"/> | |
| 135 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-75" name="MS-GF:RawScore"/> | |
| 136 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="203" name="MS-GF:DeNovoScore"/> | |
| 137 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0039381883" name="MS-GF:SpecEValue"/> | |
| 138 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="49910.527" name="MS-GF:EValue"/> | |
| 139 <userParam value="2" name="IsotopeError"/> | |
| 140 <userParam value="HCD" name="AssumedDissociationMethod"/> | |
| 141 <userParam value="0.04388853" name="ExplainedIonCurrentRatio"/> | |
| 142 <userParam value="0.0018504228" name="NTermIonCurrentRatio"/> | |
| 143 <userParam value="0.04203811" name="CTermIonCurrentRatio"/> | |
| 144 <userParam value="211725.44" name="MS2IonCurrent"/> | |
| 145 <userParam value="3" name="NumMatchedMainIons"/> | |
| 146 <userParam value="5.0645747" name="MeanErrorAll"/> | |
| 147 <userParam value="4.3375416" name="StdevErrorAll"/> | |
| 148 <userParam value="5.0645747" name="MeanErrorTop7"/> | |
| 149 <userParam value="4.3375416" name="StdevErrorTop7"/> | |
| 150 <userParam value="-5.0645747" name="MeanRelErrorAll"/> | |
| 151 <userParam value="4.3375416" name="StdevRelErrorAll"/> | |
| 152 <userParam value="-5.0645747" name="MeanRelErrorTop7"/> | |
| 153 <userParam value="4.3375416" name="StdevRelErrorTop7"/> | |
| 154 </SpectrumIdentificationItem> | |
| 155 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9739" name="scan number(s)"/> | |
| 156 </SpectrumIdentificationResult> | |
| 157 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9624" id="SIR_125"> | |
| 158 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep364" calculatedMassToCharge="412.7393798828125" experimentalMassToCharge="412.7425537109375" chargeState="2" id="SII_125_1"> | |
| 159 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2217873_364_124"/> | |
| 160 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2218487_364_118"/> | |
| 161 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2219651_364_124"/> | |
| 162 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2220892_364_124"/> | |
| 163 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2221016_364_118"/> | |
| 164 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2222191_364_118"/> | |
| 165 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2223367_364_124"/> | |
| 166 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2223824_364_94"/> | |
| 167 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2224990_364_94"/> | |
| 168 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2226818_364_124"/> | |
| 169 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2228053_364_118"/> | |
| 170 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-36" name="MS-GF:RawScore"/> | |
| 171 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="7" name="MS-GF:DeNovoScore"/> | |
| 172 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0041994834" name="MS-GF:SpecEValue"/> | |
| 173 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="46990.855" name="MS-GF:EValue"/> | |
| 174 <userParam value="0" name="IsotopeError"/> | |
| 175 <userParam value="HCD" name="AssumedDissociationMethod"/> | |
| 176 <userParam value="0.022749394" name="ExplainedIonCurrentRatio"/> | |
| 177 <userParam value="0.0055547007" name="NTermIonCurrentRatio"/> | |
| 178 <userParam value="0.017194694" name="CTermIonCurrentRatio"/> | |
| 179 <userParam value="1108970.5" name="MS2IonCurrent"/> | |
| 180 <userParam value="3" name="NumMatchedMainIons"/> | |
| 181 <userParam value="12.467069" name="MeanErrorAll"/> | |
| 182 <userParam value="2.0159998" name="StdevErrorAll"/> | |
| 183 <userParam value="12.467069" name="MeanErrorTop7"/> | |
| 184 <userParam value="2.0159998" name="StdevErrorTop7"/> | |
| 185 <userParam value="-12.467069" name="MeanRelErrorAll"/> | |
| 186 <userParam value="2.0159998" name="StdevRelErrorAll"/> | |
| 187 <userParam value="-12.467069" name="MeanRelErrorTop7"/> | |
| 188 <userParam value="2.0159998" name="StdevRelErrorTop7"/> | |
| 189 </SpectrumIdentificationItem> | |
| 190 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9624" name="scan number(s)"/> | |
| 191 </SpectrumIdentificationResult> | |
| 192 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9597" id="SIR_98"> | |
| 193 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep365" calculatedMassToCharge="374.7237548828125" experimentalMassToCharge="375.2268981933594" chargeState="2" id="SII_98_1"> | |
| 194 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931023_365_179"/> | |
| 195 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931096_365_67"/> | |
| 196 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931458_365_179"/> | |
| 197 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2932034_365_179"/> | |
| 198 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2932586_365_179"/> | |
| 199 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2933094_365_179"/> | |
| 200 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2933788_365_91"/> | |
| 201 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-31" name="MS-GF:RawScore"/> | |
| 202 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="12" name="MS-GF:DeNovoScore"/> | |
| 203 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.007490085" name="MS-GF:SpecEValue"/> | |
| 204 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="83811.62" name="MS-GF:EValue"/> | |
| 205 <userParam value="1" name="IsotopeError"/> | |
| 206 <userParam value="HCD" name="AssumedDissociationMethod"/> | |
| 207 <userParam value="0.002810515" name="ExplainedIonCurrentRatio"/> | |
| 208 <userParam value="0.0010880833" name="NTermIonCurrentRatio"/> | |
| 209 <userParam value="0.0017224317" name="CTermIonCurrentRatio"/> | |
| 210 <userParam value="1322425.9" name="MS2IonCurrent"/> | |
| 211 <userParam value="4" name="NumMatchedMainIons"/> | |
| 212 <userParam value="10.769573" name="MeanErrorAll"/> | |
| 213 <userParam value="6.174447" name="StdevErrorAll"/> | |
| 214 <userParam value="10.769573" name="MeanErrorTop7"/> | |
| 215 <userParam value="6.174447" name="StdevErrorTop7"/> | |
| 216 <userParam value="-10.314375" name="MeanRelErrorAll"/> | |
| 217 <userParam value="6.908051" name="StdevRelErrorAll"/> | |
| 218 <userParam value="-10.314375" name="MeanRelErrorTop7"/> | |
| 219 <userParam value="6.908051" name="StdevRelErrorTop7"/> | |
| 220 </SpectrumIdentificationItem> | |
| 221 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9597" name="scan number(s)"/> | |
| 222 </SpectrumIdentificationResult> | |
| 223 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9535" id="SIR_36"> | |
| 224 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep366" calculatedMassToCharge="696.261962890625" experimentalMassToCharge="696.9315795898438" chargeState="3" id="SII_36_1"> | |
| 225 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13424467_366_233"/> | |
| 226 <PeptideEvidenceRef peptideEvidence_ref="PepEv_13424717_366_233"/> | |
| 227 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-63" name="MS-GF:RawScore"/> | |
| 228 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="57" name="MS-GF:DeNovoScore"/> | |
| 229 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.009250706" name="MS-GF:SpecEValue"/> | |
| 230 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="120076.12" name="MS-GF:EValue"/> | |
| 231 <userParam value="2" name="IsotopeError"/> | |
| 232 <userParam value="HCD" name="AssumedDissociationMethod"/> | |
| 233 <userParam value="0.0" name="ExplainedIonCurrentRatio"/> | |
| 234 <userParam value="0.0" name="NTermIonCurrentRatio"/> | |
| 235 <userParam value="0.0" name="CTermIonCurrentRatio"/> | |
| 236 <userParam value="970208.1" name="MS2IonCurrent"/> | |
| 237 </SpectrumIdentificationItem> | |
| 238 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9535" name="scan number(s)"/> | |
| 239 </SpectrumIdentificationResult> | |
| 240 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9536" id="SIR_37"> | |
| 241 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep367" calculatedMassToCharge="716.6107788085938" experimentalMassToCharge="716.2726440429688" chargeState="3" id="SII_37_1"> | |
| 242 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4045574_367_1163"/> | |
| 243 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4046878_367_1210"/> | |
| 244 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4047185_367_213"/> | |
| 245 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4047445_367_166"/> | |
| 246 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4048179_367_640"/> | |
| 247 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4049204_367_814"/> | |
| 248 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4049464_367_166"/> | |
| 249 <PeptideEvidenceRef peptideEvidence_ref="PepEv_4050765_367_1121"/> | |
| 250 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-70" name="MS-GF:RawScore"/> | |
| 251 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="58" name="MS-GF:DeNovoScore"/> | |
| 252 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.01311507" name="MS-GF:SpecEValue"/> | |
| 253 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="168936.39" name="MS-GF:EValue"/> | |
| 254 <userParam value="-1" name="IsotopeError"/> | |
| 255 <userParam value="HCD" name="AssumedDissociationMethod"/> | |
| 256 <userParam value="0.021191442" name="ExplainedIonCurrentRatio"/> | |
| 257 <userParam value="0.021191442" name="NTermIonCurrentRatio"/> | |
| 258 <userParam value="0.0" name="CTermIonCurrentRatio"/> | |
| 259 <userParam value="458822.22" name="MS2IonCurrent"/> | |
| 260 <userParam value="1" name="NumMatchedMainIons"/> | |
| 261 <userParam value="7.1771297" name="MeanErrorAll"/> | |
| 262 <userParam value="0.0" name="StdevErrorAll"/> | |
| 263 <userParam value="7.1771297" name="MeanErrorTop7"/> | |
| 264 <userParam value="0.0" name="StdevErrorTop7"/> | |
| 265 <userParam value="7.1771297" name="MeanRelErrorAll"/> | |
| 266 <userParam value="0.0" name="StdevRelErrorAll"/> | |
| 267 <userParam value="7.1771297" name="MeanRelErrorTop7"/> | |
| 268 <userParam value="0.0" name="StdevRelErrorTop7"/> | |
| 269 </SpectrumIdentificationItem> | |
| 270 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9536" name="scan number(s)"/> | |
| 271 </SpectrumIdentificationResult> | |
| 272 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9562" id="SIR_63"> | |
| 273 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep368" calculatedMassToCharge="381.7315673828125" experimentalMassToCharge="382.2348937988281" chargeState="2" id="SII_63_1"> | |
| 274 <PeptideEvidenceRef peptideEvidence_ref="PepEv_23957849_368_59"/> | |
| 275 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-37" name="MS-GF:RawScore"/> | |
| 276 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="2" name="MS-GF:DeNovoScore"/> | |
| 277 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.013180328" name="MS-GF:SpecEValue"/> | |
| 278 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="147483.58" name="MS-GF:EValue"/> | |
| 279 <userParam value="1" name="IsotopeError"/> | |
| 280 <userParam value="HCD" name="AssumedDissociationMethod"/> | |
| 281 <userParam value="0.029766617" name="ExplainedIonCurrentRatio"/> | |
| 282 <userParam value="0.0065177265" name="NTermIonCurrentRatio"/> | |
| 283 <userParam value="0.02324889" name="CTermIonCurrentRatio"/> | |
| 284 <userParam value="1004098.9" name="MS2IonCurrent"/> | |
| 285 <userParam value="5" name="NumMatchedMainIons"/> | |
| 286 <userParam value="6.8986616" name="MeanErrorAll"/> | |
| 287 <userParam value="3.4906154" name="StdevErrorAll"/> | |
| 288 <userParam value="6.8986616" name="MeanErrorTop7"/> | |
| 289 <userParam value="3.4906154" name="StdevErrorTop7"/> | |
| 290 <userParam value="-4.629228" name="MeanRelErrorAll"/> | |
| 291 <userParam value="6.192429" name="StdevRelErrorAll"/> | |
| 292 <userParam value="-4.629228" name="MeanRelErrorTop7"/> | |
| 293 <userParam value="6.192429" name="StdevRelErrorTop7"/> | |
| 294 <userParam name="percolator:score" value="-1.105"/> | |
| 295 <userParam name="percolator:psm_p_value" value="6.287e-01"/> | |
| 296 <userParam name="percolator:psm_q_value" value="1.000e+00"/> | |
| 297 <userParam name="percolator:psm_pep" value="1.000e+00"/> | |
| 298 <userParam name="percolator:peptide_q_value" value="1.000e+00"/> | |
| 299 <userParam name="percolator:peptide_pep" value="1.000e+00"/> | |
| 300 </SpectrumIdentificationItem> | |
| 301 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9562" name="scan number(s)"/> | |
| 302 </SpectrumIdentificationResult> | |
| 303 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9802" id="SIR_303"> | |
| 304 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep369" calculatedMassToCharge="402.7550354003906" experimentalMassToCharge="403.25836181640625" chargeState="2" id="SII_303_1"> | |
| 305 <PeptideEvidenceRef peptideEvidence_ref="PepEv_20983112_369_271"/> | |
| 306 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-38" name="MS-GF:RawScore"/> | |
| 307 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="6" name="MS-GF:DeNovoScore"/> | |
| 308 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.014048123" name="MS-GF:SpecEValue"/> | |
| 309 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="157193.92" name="MS-GF:EValue"/> | |
| 310 <userParam value="1" name="IsotopeError"/> | |
| 311 <userParam value="HCD" name="AssumedDissociationMethod"/> | |
| 312 <userParam value="0.022009742" name="ExplainedIonCurrentRatio"/> | |
| 313 <userParam value="0.0014010341" name="NTermIonCurrentRatio"/> | |
| 314 <userParam value="0.020608708" name="CTermIonCurrentRatio"/> | |
| 315 <userParam value="564391.6" name="MS2IonCurrent"/> | |
| 316 <userParam value="4" name="NumMatchedMainIons"/> | |
| 317 <userParam value="6.9542007" name="MeanErrorAll"/> | |
| 318 <userParam value="3.3916576" name="StdevErrorAll"/> | |
| 319 <userParam value="6.9542007" name="MeanErrorTop7"/> | |
| 320 <userParam value="3.3916576" name="StdevErrorTop7"/> | |
| 321 <userParam value="-3.5387955" name="MeanRelErrorAll"/> | |
| 322 <userParam value="6.8804927" name="StdevRelErrorAll"/> | |
| 323 <userParam value="-3.5387955" name="MeanRelErrorTop7"/> | |
| 324 <userParam value="6.8804927" name="StdevRelErrorTop7"/> | |
| 325 </SpectrumIdentificationItem> | |
| 326 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9802" name="scan number(s)"/> | |
| 327 </SpectrumIdentificationResult> | |
| 328 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9594" id="SIR_95"> | |
| 329 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep370" calculatedMassToCharge="397.7341003417969" experimentalMassToCharge="397.7373352050781" chargeState="2" id="SII_95_1"> | |
| 330 <PeptideEvidenceRef peptideEvidence_ref="PepEv_26265098_370_442"/> | |
| 331 <PeptideEvidenceRef peptideEvidence_ref="PepEv_26265620_370_450"/> | |
| 332 <PeptideEvidenceRef peptideEvidence_ref="PepEv_29673543_370_160"/> | |
| 333 <PeptideEvidenceRef peptideEvidence_ref="PepEv_32435502_370_1129"/> | |
| 334 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-51" name="MS-GF:RawScore"/> | |
| 335 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="13" name="MS-GF:DeNovoScore"/> | |
| 336 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.021325951" name="MS-GF:SpecEValue"/> | |
| 337 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="238630.45" name="MS-GF:EValue"/> | |
| 338 <userParam value="0" name="IsotopeError"/> | |
| 339 <userParam value="HCD" name="AssumedDissociationMethod"/> | |
| 340 <userParam value="0.030569095" name="ExplainedIonCurrentRatio"/> | |
| 341 <userParam value="0.00203066" name="NTermIonCurrentRatio"/> | |
| 342 <userParam value="0.028538436" name="CTermIonCurrentRatio"/> | |
| 343 <userParam value="1176358.8" name="MS2IonCurrent"/> | |
| 344 <userParam value="4" name="NumMatchedMainIons"/> | |
| 345 <userParam value="7.255852" name="MeanErrorAll"/> | |
| 346 <userParam value="3.8946548" name="StdevErrorAll"/> | |
| 347 <userParam value="7.255852" name="MeanErrorTop7"/> | |
| 348 <userParam value="3.8946548" name="StdevErrorTop7"/> | |
| 349 <userParam value="-2.0970254" name="MeanRelErrorAll"/> | |
| 350 <userParam value="7.9635553" name="StdevRelErrorAll"/> | |
| 351 <userParam value="-2.0970254" name="MeanRelErrorTop7"/> | |
| 352 <userParam value="7.9635553" name="StdevRelErrorTop7"/> | |
| 353 </SpectrumIdentificationItem> | |
| 354 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9594" name="scan number(s)"/> | |
| 355 </SpectrumIdentificationResult> | |
| 356 <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9681" id="SIR_182"> | |
| 357 <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep371" calculatedMassToCharge="388.7393798828125" experimentalMassToCharge="389.2425537109375" chargeState="2" id="SII_182_1"> | |
| 358 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8122661_371_164"/> | |
| 359 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8122856_371_29"/> | |
| 360 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8123174_371_89"/> | |
| 361 <PeptideEvidenceRef peptideEvidence_ref="PepEv_8123331_371_113"/> | |
| 362 <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-63" name="MS-GF:RawScore"/> | |
| 363 <cvParam accession="MS:1002050" cvRef="PSI-MS" value="12" name="MS-GF:DeNovoScore"/> | |
| 364 <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.041115593" name="MS-GF:SpecEValue"/> | |
| 365 <cvParam accession="MS:1002053" cvRef="PSI-MS" value="460070.12" name="MS-GF:EValue"/> | |
| 366 <userParam value="1" name="IsotopeError"/> | |
| 367 <userParam value="HCD" name="AssumedDissociationMethod"/> | |
| 368 <userParam value="0.0032015902" name="ExplainedIonCurrentRatio"/> | |
| 369 <userParam value="6.9299503E-4" name="NTermIonCurrentRatio"/> | |
| 370 <userParam value="0.0025085951" name="CTermIonCurrentRatio"/> | |
| 371 <userParam value="1018012.9" name="MS2IonCurrent"/> | |
| 372 <userParam value="3" name="NumMatchedMainIons"/> | |
| 373 <userParam value="9.696182" name="MeanErrorAll"/> | |
| 374 <userParam value="1.2990792" name="StdevErrorAll"/> | |
| 375 <userParam value="9.696182" name="MeanErrorTop7"/> | |
| 376 <userParam value="1.2990792" name="StdevErrorTop7"/> | |
| 377 <userParam value="-9.696182" name="MeanRelErrorAll"/> | |
| 378 <userParam value="1.2990792" name="StdevRelErrorAll"/> | |
| 379 <userParam value="-9.696182" name="MeanRelErrorTop7"/> | |
| 380 <userParam value="1.2990792" name="StdevRelErrorTop7"/> | |
| 381 </SpectrumIdentificationItem> | |
| 382 <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9681" name="scan number(s)"/> | |
| 383 </SpectrumIdentificationResult> | |
| 384 </SpectrumIdentificationList> | |
| 385 </AnalysisData> | |
| 386 </DataCollection> | |
| 387 </MzIdentML> |