Mercurial > repos > galaxyp > percolator

diff test-data/percolatorOut.xml @ 6:07107a686ce9 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit de8cdf895c3c6113f301a119788701b2465a1b1b"
author galaxyp
date Thu, 13 Aug 2020 03:53:33 -0400
parents 7a0951d0e13e
children
line wrap: on
line diff
--- a/test-data/percolatorOut.xml	Fri May 19 09:01:27 2017 -0400
+++ b/test-data/percolatorOut.xml	Thu Aug 13 03:53:33 2020 -0400
@@ -4,10 +4,10 @@
 xmlns:p="http://per-colator.com/percolator_out/15" 
 xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" 
 xsi:schemaLocation="http://per-colator.com/percolator_out/15 https://github.com/percolator/percolator/raw/pout-1-5/src/xml/percolator_out.xsd" 
-p:majorVersion="3" p:minorVersion="01" p:percolator_version="Percolator version 3.01">
+p:majorVersion="3" p:minorVersion="05" p:percolator_version="Percolator version 3.05.0">
 
   <process_info>
-    <command_line>percolator -X percotest -j percolatorTab --decoy-xml-output</command_line>
+    <command_line>percolator -j percolatorTab -X percotest --decoy-xml-output -y</command_line>
     <other_command_line></other_command_line>
     <pi_0_psms>0.790264</pi_0_psms>
     <pi_0_peptides>0.805704</pi_0_peptides>
@@ -19,7 +19,7 @@
     <psm p:psm_id="dataset_2_SII_438_1_9937_2_1" p:decoy="false">
       <svm_score>0.000000</svm_score>
       <q_value>2.195178e-02</q_value>
-      <pep>6.523451e-02</pep>
+      <pep>4.817157e-02</pep>
       <exp_mass>1111.0600</exp_mass>
       <calc_mass>1111.070</calc_mass>
       <peptide_seq n="K" c="A" seq="[UNIMOD:737]YQLQSQENFEAFMK[UNIMOD:737]"/>
@@ -30,7 +30,7 @@
     <psm p:psm_id="dataset_3_SII_386_1_9885_4_1" p:decoy="false">
       <svm_score>0.000</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>6.523e-02</pep>
+      <pep>4.817e-02</pep>
       <exp_mass>573.8040</exp_mass>
       <calc_mass>573.810</calc_mass>
       <peptide_seq n="K" c="G" seq="[UNIMOD:737]TYFPHFDLSHGSAQVK[UNIMOD:737]"/>
@@ -43,7 +43,7 @@
     <psm p:psm_id="dataset_3_SII_343_1_9842_3_1" p:decoy="false">
       <svm_score>0.000</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>6.523e-02</pep>
+      <pep>4.817e-02</pep>
       <exp_mass>804.7940</exp_mass>
       <calc_mass>804.802</calc_mass>
       <peptide_seq n="R" c="A" seq="[UNIMOD:737]VAPEEHPVLLTEAPLNPK[UNIMOD:737]"/>
@@ -67,7 +67,7 @@
     <psm p:psm_id="dataset_2_SII_259_1_9758_3_1" p:decoy="false">
       <svm_score>-0.017</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>7.098e-02</pep>
+      <pep>5.255e-02</pep>
       <exp_mass>1020.5000</exp_mass>
       <calc_mass>1020.180</calc_mass>
       <peptide_seq n="K" c="V" seq="[UNIMOD:737]TDEFQLHTNVNDGTEFGGSIYQK[UNIMOD:737]"/>
@@ -79,7 +79,7 @@
     <psm p:psm_id="dataset_3_SII_398_1_9897_5_1" p:decoy="false">
       <svm_score>-0.023</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>7.318e-02</pep>
+      <pep>5.422e-02</pep>
       <exp_mass>568.2950</exp_mass>
       <calc_mass>568.100</calc_mass>
       <peptide_seq n="K" c="Y" seq="[UNIMOD:737]ALGISPFHEHAEVVFTANDSGPRR"/>
@@ -90,7 +90,7 @@
     <psm p:psm_id="dataset_3_SII_306_1_9805_4_1" p:decoy="false">
       <svm_score>-0.230</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>2.088e-01</pep>
+      <pep>1.597e-01</pep>
       <exp_mass>538.5580</exp_mass>
       <calc_mass>538.563</calc_mass>
       <peptide_seq n="R" c="L" seq="[UNIMOD:737]HLQLAIRNDEELNK[UNIMOD:737]"/>
@@ -124,7 +124,7 @@
     <psm p:psm_id="dataset_2_SII_247_1_9746_3_1" p:decoy="false">
       <svm_score>-0.234</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>2.127e-01</pep>
+      <pep>1.628e-01</pep>
       <exp_mass>700.0860</exp_mass>
       <calc_mass>700.093</calc_mass>
       <peptide_seq n="K" c="N" seq="[UNIMOD:737]K[UNIMOD:737]VPQVSTPTLVEVSR"/>
@@ -141,7 +141,7 @@
     <psm p:psm_id="dataset_3_SII_176_1_9675_2_1" p:decoy="false">
       <svm_score>-0.236</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>2.152e-01</pep>
+      <pep>1.648e-01</pep>
       <exp_mass>1023.0400</exp_mass>
       <calc_mass>1023.050</calc_mass>
       <peptide_seq n="K" c="I" seq="[UNIMOD:737]VQALEEANNDLENK[UNIMOD:737]"/>
@@ -151,7 +151,7 @@
     <psm p:psm_id="dataset_3_SII_301_1_9800_3_1" p:decoy="false">
       <svm_score>-0.280</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>2.678e-01</pep>
+      <pep>2.065e-01</pep>
       <exp_mass>973.1370</exp_mass>
       <calc_mass>973.145</calc_mass>
       <peptide_seq n="K" c="V" seq="[UNIMOD:737]VIQNEFTVGEEC[UNIMOD:4]ELETM[UNIMOD:35]TGEK[UNIMOD:737]"/>
@@ -162,7 +162,7 @@
     <psm p:psm_id="dataset_2_SII_267_1_9766_2_1" p:decoy="false">
       <svm_score>-0.285</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>2.756e-01</pep>
+      <pep>2.126e-01</pep>
       <exp_mass>1128.0700</exp_mass>
       <calc_mass>1127.580</calc_mass>
       <peptide_seq n="R" c="G" seq="[UNIMOD:737]SVGDGETVEFDVVEGEK[UNIMOD:737]"/>
@@ -177,7 +177,7 @@
     <psm p:psm_id="dataset_2_SII_433_1_9932_2_1" p:decoy="false">
       <svm_score>-0.289</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>2.805e-01</pep>
+      <pep>2.165e-01</pep>
       <exp_mass>939.5320</exp_mass>
       <calc_mass>939.540</calc_mass>
       <peptide_seq n="R" c="V" seq="[UNIMOD:737]QAQEYEALLNIK[UNIMOD:737]"/>
@@ -189,7 +189,7 @@
     <psm p:psm_id="dataset_3_SII_350_1_9849_2_1" p:decoy="false">
       <svm_score>-0.289</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>2.809e-01</pep>
+      <pep>2.168e-01</pep>
       <exp_mass>897.9910</exp_mass>
       <calc_mass>898.000</calc_mass>
       <peptide_seq n="R" c="A" seq="[UNIMOD:737]SLDM[UNIMOD:35]DSIIAEVK[UNIMOD:737]"/>
@@ -203,7 +203,7 @@
     <psm p:psm_id="dataset_2_SII_416_1_9915_4_1" p:decoy="false">
       <svm_score>-0.324</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>3.348e-01</pep>
+      <pep>2.599e-01</pep>
       <exp_mass>719.1310</exp_mass>
       <calc_mass>719.138</calc_mass>
       <peptide_seq n="K" c="Q" seq="[UNIMOD:737]LYHSEAFTVNFGDTEEAK[UNIMOD:737]K[UNIMOD:737]"/>
@@ -233,7 +233,7 @@
     <psm p:psm_id="dataset_3_SII_341_1_9840_3_1" p:decoy="false">
       <svm_score>-0.329</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>3.436e-01</pep>
+      <pep>2.670e-01</pep>
       <exp_mass>525.2790</exp_mass>
       <calc_mass>525.284</calc_mass>
       <peptide_seq n="R" c="G" seq="[UNIMOD:737]ASLEAAIADAEQR"/>
@@ -246,7 +246,7 @@
     <psm p:psm_id="dataset_2_SII_408_1_9907_2_1" p:decoy="false">
       <svm_score>-0.342</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>3.660e-01</pep>
+      <pep>2.849e-01</pep>
       <exp_mass>1086.5600</exp_mass>
       <calc_mass>1086.570</calc_mass>
       <peptide_seq n="K" c="L" seq="[UNIMOD:737]ESVNAAFEMTLTEGSK[UNIMOD:737]"/>
@@ -256,7 +256,7 @@
     <psm p:psm_id="dataset_2_SII_468_1_9967_3_1" p:decoy="false">
       <svm_score>-0.344</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>3.700e-01</pep>
+      <pep>2.881e-01</pep>
       <exp_mass>831.1240</exp_mass>
       <calc_mass>831.132</calc_mass>
       <peptide_seq n="K" c="R" seq="[UNIMOD:737]FTASAGIQVVGDDLTVTNPK[UNIMOD:737]"/>
@@ -266,7 +266,7 @@
     <psm p:psm_id="dataset_3_SII_156_1_9655_3_1" p:decoy="false">
       <svm_score>-0.351</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>3.841e-01</pep>
+      <pep>2.995e-01</pep>
       <exp_mass>863.0590</exp_mass>
       <calc_mass>862.732</calc_mass>
       <peptide_seq n="R" c="-" seq="[UNIMOD:737]GVGDDQLGEESEERDDHLLPM[UNIMOD:35]"/>
@@ -278,7 +278,7 @@
     <psm p:psm_id="dataset_2_SII_279_1_9778_2_1" p:decoy="false">
       <svm_score>-0.354</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>3.898e-01</pep>
+      <pep>3.040e-01</pep>
       <exp_mass>876.4500</exp_mass>
       <calc_mass>876.456</calc_mass>
       <peptide_seq n="R" c="N" seq="[UNIMOD:737]TVQSLEIDLDSM[UNIMOD:35]R"/>
@@ -290,7 +290,7 @@
     <psm p:psm_id="dataset_2_SII_284_1_9783_2_1" p:decoy="false">
       <svm_score>-0.357</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>3.942e-01</pep>
+      <pep>3.076e-01</pep>
       <exp_mass>1094.5500</exp_mass>
       <calc_mass>1094.560</calc_mass>
       <peptide_seq n="K" c="L" seq="[UNIMOD:737]ESVNAAFEM[UNIMOD:35]TLTEGSK[UNIMOD:737]"/>
@@ -300,7 +300,7 @@
     <psm p:psm_id="dataset_3_SII_327_1_9826_2_1" p:decoy="false">
       <svm_score>-0.377</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>4.356e-01</pep>
+      <pep>3.410e-01</pep>
       <exp_mass>950.4940</exp_mass>
       <calc_mass>950.502</calc_mass>
       <peptide_seq n="R" c="N" seq="[UNIMOD:737]NGDGVVDIGELQEGLR"/>
@@ -312,7 +312,7 @@
     <psm p:psm_id="dataset_2_SII_254_1_9753_2_1" p:decoy="false">
       <svm_score>-0.380</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>4.428e-01</pep>
+      <pep>3.468e-01</pep>
       <exp_mass>736.4180</exp_mass>
       <calc_mass>736.425</calc_mass>
       <peptide_seq n="K" c="V" seq="[UNIMOD:737]DAGQISGLNVLR"/>
@@ -322,7 +322,7 @@
     <psm p:psm_id="dataset_2_SII_289_1_9788_3_1" p:decoy="false">
       <svm_score>-0.382</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>4.487e-01</pep>
+      <pep>3.515e-01</pep>
       <exp_mass>526.6090</exp_mass>
       <calc_mass>526.614</calc_mass>
       <peptide_seq n="K" c="A" seq="[UNIMOD:737]HFSVEGQLEFR"/>
@@ -337,7 +337,7 @@
     <psm p:psm_id="dataset_2_SII_265_1_9764_3_1" p:decoy="false">
       <svm_score>-0.391</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>4.679e-01</pep>
+      <pep>3.671e-01</pep>
       <exp_mass>855.7670</exp_mass>
       <calc_mass>855.774</calc_mass>
       <peptide_seq n="R" c="L" seq="[UNIMOD:737]EGRPSGEAFVELESEDEVK[UNIMOD:737]"/>
@@ -363,7 +363,7 @@
     <psm p:psm_id="dataset_2_SII_277_1_9776_2_1" p:decoy="false">
       <svm_score>-0.400</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>4.907e-01</pep>
+      <pep>3.856e-01</pep>
       <exp_mass>967.5510</exp_mass>
       <calc_mass>967.559</calc_mass>
       <peptide_seq n="R" c="W" seq="[UNIMOD:737]FLEQQNQVLQTK[UNIMOD:737]"/>
@@ -375,7 +375,7 @@
     <psm p:psm_id="dataset_3_SII_140_1_9639_2_1" p:decoy="false">
       <svm_score>-0.402</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>4.957e-01</pep>
+      <pep>3.896e-01</pep>
       <exp_mass>837.4880</exp_mass>
       <calc_mass>837.496</calc_mass>
       <peptide_seq n="K" c="I" seq="[UNIMOD:737]NAGVEGSLIVEK[UNIMOD:737]"/>
@@ -386,7 +386,7 @@
     <psm p:psm_id="dataset_2_SII_402_1_9901_2_1" p:decoy="false">
       <svm_score>-0.405</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>5.026e-01</pep>
+      <pep>3.953e-01</pep>
       <exp_mass>823.9180</exp_mass>
       <calc_mass>823.925</calc_mass>
       <peptide_seq n="K" c="L" seq="[UNIMOD:737]ILDSVGIEADDDR"/>
@@ -397,7 +397,7 @@
     <psm p:psm_id="dataset_3_SII_329_1_9828_2_1" p:decoy="false">
       <svm_score>-0.436</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>5.865e-01</pep>
+      <pep>4.636e-01</pep>
       <exp_mass>981.0370</exp_mass>
       <calc_mass>981.046</calc_mass>
       <peptide_seq n="K" c="A" seq="[UNIMOD:737]DSTYSLSSTLTLSK[UNIMOD:737]"/>
@@ -407,7 +407,7 @@
     <psm p:psm_id="dataset_3_SII_356_1_9855_5_1" p:decoy="false">
       <svm_score>-0.452</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>6.348e-01</pep>
+      <pep>5.031e-01</pep>
       <exp_mass>368.8160</exp_mass>
       <calc_mass>368.819</calc_mass>
       <peptide_seq n="R" c="H" seq="[UNIMOD:737]K[UNIMOD:737]HGGPK[UNIMOD:737]DEER"/>
@@ -418,7 +418,7 @@
     <psm p:psm_id="dataset_2_SII_405_1_9904_4_1" p:decoy="false">
       <svm_score>-0.453</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>6.376e-01</pep>
+      <pep>5.054e-01</pep>
       <exp_mass>706.1090</exp_mass>
       <calc_mass>705.864</calc_mass>
       <peptide_seq n="K" c="V" seq="[UNIMOD:737]EIEQEAAVELSQLRDPQHDLDR"/>
@@ -428,7 +428,7 @@
     <psm p:psm_id="dataset_2_SII_287_1_9786_3_1" p:decoy="false">
       <svm_score>-0.466</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>6.797e-01</pep>
+      <pep>5.399e-01</pep>
       <exp_mass>802.3780</exp_mass>
       <calc_mass>802.386</calc_mass>
       <peptide_seq n="R" c="G" seq="[UNIMOD:737]EHINLGC[UNIMOD:4]DM[UNIMOD:35]DFDIAGPSIR"/>
@@ -441,7 +441,7 @@
     <psm p:psm_id="dataset_3_SII_371_1_9870_3_1" p:decoy="false">
       <svm_score>-0.481</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>7.330e-01</pep>
+      <pep>5.838e-01</pep>
       <exp_mass>883.5000</exp_mass>
       <calc_mass>883.165</calc_mass>
       <peptide_seq n="K" c="I" seq="[UNIMOD:737]FTASAGIQVVGDDLTVTNPK[UNIMOD:737]R"/>
@@ -451,7 +451,7 @@
     <psm p:psm_id="dataset_2_SII_258_1_9757_2_1" p:decoy="false">
       <svm_score>-0.484</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>7.416e-01</pep>
+      <pep>5.909e-01</pep>
       <exp_mass>816.4770</exp_mass>
       <calc_mass>816.485</calc_mass>
       <peptide_seq n="K" c="-" seq="[UNIMOD:737]LVSESSDVLPK[UNIMOD:737]"/>
@@ -464,7 +464,7 @@
     <psm p:psm_id="dataset_3_SII_121_1_9620_2_1" p:decoy="false">
       <svm_score>-0.500</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>8.033e-01</pep>
+      <pep>6.419e-01</pep>
       <exp_mass>732.8750</exp_mass>
       <calc_mass>732.882</calc_mass>
       <peptide_seq n="K" c="T" seq="[UNIMOD:737]SLEDQVEM[UNIMOD:35]LR"/>
@@ -477,7 +477,7 @@
     <psm p:psm_id="dataset_2_SII_403_1_9902_2_1" p:decoy="false">
       <svm_score>-0.504</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>8.198e-01</pep>
+      <pep>6.556e-01</pep>
       <exp_mass>717.9330</exp_mass>
       <calc_mass>717.940</calc_mass>
       <peptide_seq n="K" c="H" seq="[UNIMOD:737]QIFLGGVDK[UNIMOD:737]"/>
@@ -488,7 +488,7 @@
     <psm p:psm_id="dataset_2_SII_285_1_9784_2_1" p:decoy="false">
       <svm_score>-0.516</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>8.708e-01</pep>
+      <pep>6.979e-01</pep>
       <exp_mass>645.3610</exp_mass>
       <calc_mass>645.367</calc_mass>
       <peptide_seq n="K" c="M" seq="[UNIMOD:737]TLLDIDNTR"/>
@@ -498,7 +498,7 @@
     <psm p:psm_id="dataset_3_SII_381_1_9880_2_1" p:decoy="false">
       <svm_score>-0.518</svm_score>
       <q_value>2.195e-02</q_value>
-      <pep>8.780e-01</pep>
+      <pep>7.039e-01</pep>
       <exp_mass>772.4510</exp_mass>
       <calc_mass>772.458</calc_mass>
       <peptide_seq n="R" c="V" seq="[UNIMOD:737]LSLNIDPDAK[UNIMOD:737]"/>
@@ -509,7 +509,7 @@
     <psm p:psm_id="dataset_88023_SII_10276_1_10276_5_1" p:decoy="true">
       <svm_score>-0.535</svm_score>
       <q_value>4.159e-02</q_value>
-      <pep>9.510e-01</pep>
+      <pep>7.647e-01</pep>
       <exp_mass>1257.4800</exp_mass>
       <calc_mass>1257.670</calc_mass>
       <peptide_seq n="K" c="K" seq="[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]EK[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]HK[UNIMOD:737]K[UNIMOD:737]HK[UNIMOD:737]K[UNIMOD:737]HK[UNIMOD:737]K[UNIMOD:737]HK[UNIMOD:737]"/>
@@ -521,7 +521,7 @@
     <psm p:psm_id="dataset_2_SII_270_1_9769_2_1" p:decoy="false">
       <svm_score>-0.536</svm_score>
       <q_value>4.159e-02</q_value>
-      <pep>9.556e-01</pep>
+      <pep>7.685e-01</pep>
       <exp_mass>651.8770</exp_mass>
       <calc_mass>651.883</calc_mass>
       <peptide_seq n="K" c="I" seq="[UNIMOD:737]ILGATIENSR"/>
@@ -531,7 +531,7 @@
     <psm p:psm_id="dataset_2_SII_276_1_9775_2_1" p:decoy="false">
       <svm_score>-0.540</svm_score>
       <q_value>4.159e-02</q_value>
-      <pep>9.785e-01</pep>
+      <pep>7.876e-01</pep>
       <exp_mass>798.4490</exp_mass>
       <calc_mass>798.456</calc_mass>
       <peptide_seq n="K" c="H" seq="[UNIMOD:737]YEELQSLAGK[UNIMOD:737]"/>
@@ -544,7 +544,7 @@
     <psm p:psm_id="dataset_88023_SII_7364_1_7364_6_1" p:decoy="true">
       <svm_score>-0.543</svm_score>
       <q_value>5.044e-02</q_value>
-      <pep>9.930e-01</pep>
+      <pep>7.997e-01</pep>
       <exp_mass>1374.8800</exp_mass>
       <calc_mass>1375.040</calc_mass>
       <peptide_seq n="K" c="K" seq="[UNIMOD:737]EK[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]MK[UNIMOD:737]DANENK[UNIMOD:737]LLK[UNIMOD:737]ESK[UNIMOD:737]MQK[UNIMOD:737]K[UNIMOD:737]ESK[UNIMOD:737]K[UNIMOD:737]SK[UNIMOD:737]EQK[UNIMOD:737]EK[UNIMOD:737]SK[UNIMOD:737]"/>
@@ -555,7 +555,7 @@
     <psm p:psm_id="dataset_3_SII_307_1_9806_2_1" p:decoy="false">
       <svm_score>-0.546</svm_score>
       <q_value>5.044e-02</q_value>
-      <pep>1.000e+00</pep>
+      <pep>8.087e-01</pep>
       <exp_mass>628.3770</exp_mass>
       <calc_mass>628.382</calc_mass>
       <peptide_seq n="K" c="G" seq="[UNIMOD:737]AVDSLVPIGR"/>
@@ -571,7 +571,7 @@
     <psm p:psm_id="dataset_2_SII_452_1_9951_2_1" p:decoy="false">
       <svm_score>-0.569</svm_score>
       <q_value>5.044e-02</q_value>
-      <pep>1.000e+00</pep>
+      <pep>9.088e-01</pep>
       <exp_mass>1223.1100</exp_mass>
       <calc_mass>1223.610</calc_mass>
       <peptide_seq n="K" c="M" seq="[UNIMOD:737]DLYANTVLSGGSTM[UNIMOD:35]YPGIADR"/>
@@ -581,7 +581,7 @@
     <psm p:psm_id="dataset_2_SII_417_1_9916_3_1" p:decoy="false">
       <svm_score>-0.584</svm_score>
       <q_value>5.044e-02</q_value>
-      <pep>1.000e+00</pep>
+      <pep>9.756e-01</pep>
       <exp_mass>492.6210</exp_mass>
       <calc_mass>492.626</calc_mass>
       <peptide_seq n="K" c="L" seq="[UNIMOD:737]SLHTLFGDK[UNIMOD:737]"/>
@@ -25618,7 +25618,7 @@
     <peptide p:peptide_id="[UNIMOD:737]YQLQSQENFEAFMK[UNIMOD:737]" p:decoy="false">
       <svm_score>0.000000</svm_score>
       <q_value>2.238067e-02</q_value>
-      <pep>5.816870e-02</pep>
+      <pep>5.510359e-02</pep>
       <exp_mass>1111.0600</exp_mass>
       <calc_mass>1111.070</calc_mass>
       <protein_id>ENSP00000295834.3</protein_id>
@@ -25631,7 +25631,7 @@
     <peptide p:peptide_id="[UNIMOD:737]TYFPHFDLSHGSAQVK[UNIMOD:737]" p:decoy="false">
       <svm_score>0.000</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>5.817e-02</pep>
+      <pep>5.510e-02</pep>
       <exp_mass>573.8040</exp_mass>
       <calc_mass>573.810</calc_mass>
       <protein_id>ENSP00000322421.5</protein_id>
@@ -25646,7 +25646,7 @@
     <peptide p:peptide_id="[UNIMOD:737]VAPEEHPVLLTEAPLNPK[UNIMOD:737]" p:decoy="false">
       <svm_score>0.000</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>5.817e-02</pep>
+      <pep>5.510e-02</pep>
       <exp_mass>804.7940</exp_mass>
       <calc_mass>804.802</calc_mass>
       <protein_id>ENSP00000349960.4</protein_id>
@@ -25672,7 +25672,7 @@
     <peptide p:peptide_id="[UNIMOD:737]TDEFQLHTNVNDGTEFGGSIYQK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.017</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>6.349e-02</pep>
+      <pep>5.995e-02</pep>
       <exp_mass>1020.5000</exp_mass>
       <calc_mass>1020.180</calc_mass>
       <protein_id>ENSP00000378484.3</protein_id>
@@ -25686,7 +25686,7 @@
     <peptide p:peptide_id="[UNIMOD:737]ALGISPFHEHAEVVFTANDSGPRR" p:decoy="false">
       <svm_score>-0.023</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>6.553e-02</pep>
+      <pep>6.180e-02</pep>
       <exp_mass>568.2950</exp_mass>
       <calc_mass>568.100</calc_mass>
       <protein_id>ENSP00000237014.3</protein_id>
@@ -25699,7 +25699,7 @@
     <peptide p:peptide_id="[UNIMOD:737]HLQLAIRNDEELNK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.230</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>1.945e-01</pep>
+      <pep>1.761e-01</pep>
       <exp_mass>538.5580</exp_mass>
       <calc_mass>538.563</calc_mass>
       <protein_id>ENSP00000482538.1</protein_id>
@@ -25735,7 +25735,7 @@
     <peptide p:peptide_id="[UNIMOD:737]K[UNIMOD:737]VPQVSTPTLVEVSR" p:decoy="false">
       <svm_score>-0.234</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>1.983e-01</pep>
+      <pep>1.794e-01</pep>
       <exp_mass>700.0860</exp_mass>
       <calc_mass>700.093</calc_mass>
       <protein_id>ENSP00000295897.4</protein_id>
@@ -25754,7 +25754,7 @@
     <peptide p:peptide_id="[UNIMOD:737]VQALEEANNDLENK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.236</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>2.007e-01</pep>
+      <pep>1.815e-01</pep>
       <exp_mass>1023.0400</exp_mass>
       <calc_mass>1023.050</calc_mass>
       <protein_id>ENSP00000246662.4</protein_id>
@@ -25766,7 +25766,7 @@
     <peptide p:peptide_id="[UNIMOD:737]VIQNEFTVGEEC[UNIMOD:4]ELETM[UNIMOD:35]TGEK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.280</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>2.518e-01</pep>
+      <pep>2.258e-01</pep>
       <exp_mass>973.1370</exp_mass>
       <calc_mass>973.145</calc_mass>
       <protein_id>ENSP00000295834.3</protein_id>
@@ -25779,7 +25779,7 @@
     <peptide p:peptide_id="[UNIMOD:737]SVGDGETVEFDVVEGEK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.285</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>2.594e-01</pep>
+      <pep>2.324e-01</pep>
       <exp_mass>1128.0700</exp_mass>
       <calc_mass>1127.580</calc_mass>
       <protein_id>ENSP00000007699.5</protein_id>
@@ -25796,7 +25796,7 @@
     <peptide p:peptide_id="[UNIMOD:737]QAQEYEALLNIK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.289</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>2.642e-01</pep>
+      <pep>2.365e-01</pep>
       <exp_mass>939.5320</exp_mass>
       <calc_mass>939.540</calc_mass>
       <protein_id>ENSP00000447278.1</protein_id>
@@ -25810,7 +25810,7 @@
     <peptide p:peptide_id="[UNIMOD:737]SLDM[UNIMOD:35]DSIIAEVK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.289</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>2.645e-01</pep>
+      <pep>2.368e-01</pep>
       <exp_mass>897.9910</exp_mass>
       <calc_mass>898.000</calc_mass>
       <protein_id>ENSP00000447566.1</protein_id>
@@ -25826,7 +25826,7 @@
     <peptide p:peptide_id="[UNIMOD:737]LYHSEAFTVNFGDTEEAK[UNIMOD:737]K[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.324</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>3.174e-01</pep>
+      <pep>2.822e-01</pep>
       <exp_mass>719.1310</exp_mass>
       <calc_mass>719.138</calc_mass>
       <protein_id>ENSP00000390299.1</protein_id>
@@ -25858,7 +25858,7 @@
     <peptide p:peptide_id="[UNIMOD:737]ASLEAAIADAEQR" p:decoy="false">
       <svm_score>-0.329</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>3.262e-01</pep>
+      <pep>2.897e-01</pep>
       <exp_mass>525.2790</exp_mass>
       <calc_mass>525.284</calc_mass>
       <protein_id>ENSP00000447566.1</protein_id>
@@ -25873,7 +25873,7 @@
     <peptide p:peptide_id="[UNIMOD:737]ESVNAAFEMTLTEGSK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.342</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>3.482e-01</pep>
+      <pep>3.085e-01</pep>
       <exp_mass>1086.5600</exp_mass>
       <calc_mass>1086.570</calc_mass>
       <protein_id>ENSP00000357535.3</protein_id>
@@ -25885,7 +25885,7 @@
     <peptide p:peptide_id="[UNIMOD:737]FTASAGIQVVGDDLTVTNPK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.344</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>3.522e-01</pep>
+      <pep>3.119e-01</pep>
       <exp_mass>831.1240</exp_mass>
       <calc_mass>831.132</calc_mass>
       <protein_id>ENSP00000234590.4</protein_id>
@@ -25897,7 +25897,7 @@
     <peptide p:peptide_id="[UNIMOD:737]GVGDDQLGEESEERDDHLLPM[UNIMOD:35]" p:decoy="false">
       <svm_score>-0.351</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>3.661e-01</pep>
+      <pep>3.238e-01</pep>
       <exp_mass>863.0590</exp_mass>
       <calc_mass>862.732</calc_mass>
       <protein_id>ENSP00000000412.3</protein_id>
@@ -25911,7 +25911,7 @@
     <peptide p:peptide_id="[UNIMOD:737]TVQSLEIDLDSM[UNIMOD:35]R" p:decoy="false">
       <svm_score>-0.354</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>3.717e-01</pep>
+      <pep>3.286e-01</pep>
       <exp_mass>876.4500</exp_mass>
       <calc_mass>876.456</calc_mass>
       <protein_id>ENSP00000447278.1</protein_id>
@@ -25925,7 +25925,7 @@
     <peptide p:peptide_id="[UNIMOD:737]ESVNAAFEM[UNIMOD:35]TLTEGSK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.357</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>3.761e-01</pep>
+      <pep>3.323e-01</pep>
       <exp_mass>1094.5500</exp_mass>
       <calc_mass>1094.560</calc_mass>
       <protein_id>ENSP00000357535.3</protein_id>
@@ -25937,7 +25937,7 @@
     <peptide p:peptide_id="[UNIMOD:737]NGDGVVDIGELQEGLR" p:decoy="false">
       <svm_score>-0.377</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>4.172e-01</pep>
+      <pep>3.672e-01</pep>
       <exp_mass>950.4940</exp_mass>
       <calc_mass>950.502</calc_mass>
       <protein_id>ENSP00000457733.1</protein_id>
@@ -25951,7 +25951,7 @@
     <peptide p:peptide_id="[UNIMOD:737]DAGQISGLNVLR" p:decoy="false">
       <svm_score>-0.380</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>4.245e-01</pep>
+      <pep>3.733e-01</pep>
       <exp_mass>736.4180</exp_mass>
       <calc_mass>736.425</calc_mass>
       <protein_id>ENSP00000297185.3</protein_id>
@@ -25963,7 +25963,7 @@
     <peptide p:peptide_id="[UNIMOD:737]HFSVEGQLEFR" p:decoy="false">
       <svm_score>-0.382</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>4.302e-01</pep>
+      <pep>3.782e-01</pep>
       <exp_mass>526.6090</exp_mass>
       <calc_mass>526.614</calc_mass>
       <protein_id>ENSP00000216281.7</protein_id>
@@ -25980,7 +25980,7 @@
     <peptide p:peptide_id="[UNIMOD:737]EGRPSGEAFVELESEDEVK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.391</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>4.494e-01</pep>
+      <pep>3.944e-01</pep>
       <exp_mass>855.7670</exp_mass>
       <calc_mass>855.774</calc_mass>
       <protein_id>ENSP00000377082.4</protein_id>
@@ -26008,7 +26008,7 @@
     <peptide p:peptide_id="[UNIMOD:737]FLEQQNQVLQTK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.400</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>4.722e-01</pep>
+      <pep>4.136e-01</pep>
       <exp_mass>967.5510</exp_mass>
       <calc_mass>967.559</calc_mass>
       <protein_id>ENSP00000252244.3</protein_id>
@@ -26022,7 +26022,7 @@
     <peptide p:peptide_id="[UNIMOD:737]NAGVEGSLIVEK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.402</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>4.771e-01</pep>
+      <pep>4.178e-01</pep>
       <exp_mass>837.4880</exp_mass>
       <calc_mass>837.496</calc_mass>
       <protein_id>ENSP00000373620.3</protein_id>
@@ -26035,7 +26035,7 @@
     <peptide p:peptide_id="[UNIMOD:737]ILDSVGIEADDDR" p:decoy="false">
       <svm_score>-0.405</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>4.841e-01</pep>
+      <pep>4.236e-01</pep>
       <exp_mass>823.9180</exp_mass>
       <calc_mass>823.925</calc_mass>
       <protein_id>ENSP00000322419.4</protein_id>
@@ -26048,7 +26048,7 @@
     <peptide p:peptide_id="[UNIMOD:737]DSTYSLSSTLTLSK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.436</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>5.682e-01</pep>
+      <pep>4.943e-01</pep>
       <exp_mass>981.0370</exp_mass>
       <calc_mass>981.046</calc_mass>
       <protein_id>ENSP00000374777.2</protein_id>
@@ -26060,7 +26060,7 @@
     <peptide p:peptide_id="[UNIMOD:737]K[UNIMOD:737]HGGPK[UNIMOD:737]DEER" p:decoy="false">
       <svm_score>-0.452</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>6.169e-01</pep>
+      <pep>5.350e-01</pep>
       <exp_mass>368.8160</exp_mass>
       <calc_mass>368.819</calc_mass>
       <protein_id>ENSP00000270142.6</protein_id>
@@ -26073,7 +26073,7 @@
     <peptide p:peptide_id="[UNIMOD:737]EIEQEAAVELSQLRDPQHDLDR" p:decoy="false">
       <svm_score>-0.453</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>6.197e-01</pep>
+      <pep>5.374e-01</pep>
       <exp_mass>706.1090</exp_mass>
       <calc_mass>705.864</calc_mass>
       <protein_id>ENSP00000306397.3</protein_id>
@@ -26085,7 +26085,7 @@
     <peptide p:peptide_id="[UNIMOD:737]EHINLGC[UNIMOD:4]DM[UNIMOD:35]DFDIAGPSIR" p:decoy="false">
       <svm_score>-0.466</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>6.622e-01</pep>
+      <pep>5.728e-01</pep>
       <exp_mass>802.3780</exp_mass>
       <calc_mass>802.386</calc_mass>
       <protein_id>ENSP00000378484.3</protein_id>
@@ -26100,7 +26100,7 @@
     <peptide p:peptide_id="[UNIMOD:737]FTASAGIQVVGDDLTVTNPK[UNIMOD:737]R" p:decoy="false">
       <svm_score>-0.481</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>7.162e-01</pep>
+      <pep>6.177e-01</pep>
       <exp_mass>883.5000</exp_mass>
       <calc_mass>883.165</calc_mass>
       <protein_id>ENSP00000234590.4</protein_id>
@@ -26112,7 +26112,7 @@
     <peptide p:peptide_id="[UNIMOD:737]LVSESSDVLPK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.484</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>7.249e-01</pep>
+      <pep>6.249e-01</pep>
       <exp_mass>816.4770</exp_mass>
       <calc_mass>816.485</calc_mass>
       <protein_id>ENSP00000447566.1</protein_id>
@@ -26127,7 +26127,7 @@
     <peptide p:peptide_id="[UNIMOD:737]SLEDQVEM[UNIMOD:35]LR" p:decoy="false">
       <svm_score>-0.500</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>7.876e-01</pep>
+      <pep>6.768e-01</pep>
       <exp_mass>732.8750</exp_mass>
       <calc_mass>732.882</calc_mass>
       <protein_id>ENSP00000465489.1</protein_id>
@@ -26142,7 +26142,7 @@
     <peptide p:peptide_id="[UNIMOD:737]QIFLGGVDK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.504</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>8.044e-01</pep>
+      <pep>6.907e-01</pep>
       <exp_mass>717.9330</exp_mass>
       <calc_mass>717.940</calc_mass>
       <protein_id>ENSP00000360671.4</protein_id>
@@ -26155,7 +26155,7 @@
     <peptide p:peptide_id="[UNIMOD:737]TLLDIDNTR" p:decoy="false">
       <svm_score>-0.516</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>8.564e-01</pep>
+      <pep>7.336e-01</pep>
       <exp_mass>645.3610</exp_mass>
       <calc_mass>645.367</calc_mass>
       <protein_id>ENSP00000246662.4</protein_id>
@@ -26167,7 +26167,7 @@
     <peptide p:peptide_id="[UNIMOD:737]LSLNIDPDAK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.518</svm_score>
       <q_value>2.238e-02</q_value>
-      <pep>8.637e-01</pep>
+      <pep>7.397e-01</pep>
       <exp_mass>772.4510</exp_mass>
       <calc_mass>772.458</calc_mass>
       <protein_id>ENSP00000299767.4</protein_id>
@@ -26180,7 +26180,7 @@
     <peptide p:peptide_id="[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]EK[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]HK[UNIMOD:737]K[UNIMOD:737]HK[UNIMOD:737]K[UNIMOD:737]HK[UNIMOD:737]K[UNIMOD:737]HK[UNIMOD:737]" p:decoy="true">
       <svm_score>-0.535</svm_score>
       <q_value>4.241e-02</q_value>
-      <pep>9.383e-01</pep>
+      <pep>8.011e-01</pep>
       <exp_mass>1257.4800</exp_mass>
       <calc_mass>1257.670</calc_mass>
       <protein_id>decoy_ENSP00000317872.4</protein_id>
@@ -26194,7 +26194,7 @@
     <peptide p:peptide_id="[UNIMOD:737]ILGATIENSR" p:decoy="false">
       <svm_score>-0.536</svm_score>
       <q_value>4.241e-02</q_value>
-      <pep>9.429e-01</pep>
+      <pep>8.049e-01</pep>
       <exp_mass>651.8770</exp_mass>
       <calc_mass>651.883</calc_mass>
       <protein_id>ENSP00000355124.3</protein_id>
@@ -26206,7 +26206,7 @@
     <peptide p:peptide_id="[UNIMOD:737]YEELQSLAGK[UNIMOD:737]" p:decoy="false">
       <svm_score>-0.540</svm_score>
       <q_value>4.241e-02</q_value>
-      <pep>9.664e-01</pep>
+      <pep>8.242e-01</pep>
       <exp_mass>798.4490</exp_mass>
       <calc_mass>798.456</calc_mass>
       <protein_id>ENSP00000447566.1</protein_id>
@@ -26221,7 +26221,7 @@
     <peptide p:peptide_id="[UNIMOD:737]EK[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]MK[UNIMOD:737]DANENK[UNIMOD:737]LLK[UNIMOD:737]ESK[UNIMOD:737]MQK[UNIMOD:737]K[UNIMOD:737]ESK[UNIMOD:737]K[UNIMOD:737]SK[UNIMOD:737]EQK[UNIMOD:737]EK[UNIMOD:737]SK[UNIMOD:737]" p:decoy="true">
       <svm_score>-0.543</svm_score>
       <q_value>5.143e-02</q_value>
-      <pep>9.812e-01</pep>
+      <pep>8.364e-01</pep>
       <exp_mass>1374.8800</exp_mass>
       <calc_mass>1375.040</calc_mass>
       <protein_id>decoy_ENSP00000206423.3</protein_id>
@@ -26234,7 +26234,7 @@
     <peptide p:peptide_id="[UNIMOD:737]AVDSLVPIGR" p:decoy="false">
       <svm_score>-0.546</svm_score>
       <q_value>5.143e-02</q_value>
-      <pep>9.922e-01</pep>
+      <pep>8.454e-01</pep>
       <exp_mass>628.3770</exp_mass>
       <calc_mass>628.382</calc_mass>
       <protein_id>ENSP00000465477.2</protein_id>
@@ -26252,7 +26252,7 @@
     <peptide p:peptide_id="[UNIMOD:737]DLYANTVLSGGSTM[UNIMOD:35]YPGIADR" p:decoy="false">
       <svm_score>-0.569</svm_score>
       <q_value>5.143e-02</q_value>
-      <pep>1.000e+00</pep>
+      <pep>9.457e-01</pep>
       <exp_mass>1223.1100</exp_mass>
       <calc_mass>1223.610</calc_mass>
       <protein_id>ENSP00000416706.1</protein_id>