Mercurial > repos > galaxyp > percolator
view test-data/percolatorOut_alloptions.xml @ 6:07107a686ce9 draft default tip
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit de8cdf895c3c6113f301a119788701b2465a1b1b"
| author | galaxyp |
|---|---|
| date | Thu, 13 Aug 2020 03:53:33 -0400 |
| parents | 7a0951d0e13e |
| children |
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<?xml version="1.0" encoding="UTF-8"?> <percolator_output xmlns="http://per-colator.com/percolator_out/15" xmlns:p="http://per-colator.com/percolator_out/15" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://per-colator.com/percolator_out/15 https://github.com/percolator/percolator/raw/pout-1-5/src/xml/percolator_out.xsd" p:majorVersion="3" p:minorVersion="05" p:percolator_version="Percolator version 3.05.0"> <process_info> <command_line>percolator -j percolatorTab -X percotest --decoy-xml-output -Y -p 1e-05 -n 1e-05 -t 0.1 -F 0.1 -i 5 -S 2 -V RawScore -x -u -O -U</command_line> <other_command_line></other_command_line> <pi_0_psms>1</pi_0_psms> <psms_qlevel>0</psms_qlevel> </process_info> <psms> <psm p:psm_id="dataset_3_SII_343_1_9842_3_1" p:decoy="false"> <svm_score>1.535540</svm_score> <q_value>1.818182e-02</q_value> <pep>2.751398e-04</pep> <exp_mass>804.7940</exp_mass> <calc_mass>804.802</calc_mass> <peptide_seq n="R" c="A" 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<protein_id>decoy_ENSP00000429200.1</protein_id> <protein_id>decoy_ENSP00000402782.2</protein_id> <protein_id>decoy_ENSP00000290075.6</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_7457_1_7457_2_1" p:decoy="true"> <svm_score>-1.575</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>396.2500</exp_mass> <calc_mass>395.747</calc_mass> <peptide_seq n="K" c="-" seq="[UNIMOD:737]SATIVA"/> <protein_id>decoy_ENSP00000470590.1</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_8048_1_8048_2_1" p:decoy="true"> <svm_score>-1.579</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>449.2330</exp_mass> <calc_mass>448.229</calc_mass> <peptide_seq n="R" c="F" seq="[UNIMOD:737]M[UNIMOD:35]TGDAR"/> <protein_id>decoy_ENSP00000249373.3</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_7043_1_7043_2_1" p:decoy="true"> <svm_score>-1.580</svm_score> 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seq="[UNIMOD:737]GM[UNIMOD:35]SLGM[UNIMOD:35]"/> <protein_id>decoy_ENSP00000397891.1</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_10064_1_10064_5_1" p:decoy="true"> <svm_score>-1.655</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>1117.9400</exp_mass> <calc_mass>1117.750</calc_mass> <peptide_seq n="R" c="I" seq="[UNIMOD:737]MK[UNIMOD:737]IK[UNIMOD:737]VEK[UNIMOD:737]K[UNIMOD:737]DGNEK[UNIMOD:737]K[UNIMOD:737]PVIK[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]LPK[UNIMOD:737]K[UNIMOD:737]"/> <protein_id>decoy_ENSP00000220772.3</protein_id> <protein_id>decoy_ENSP00000369174.3</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_10355_1_10355_2_1" p:decoy="true"> <svm_score>-1.662</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>1070.0000</exp_mass> <calc_mass>1070.490</calc_mass> <peptide_seq n="R" c="E" seq="[UNIMOD:737]AEQIC[UNIMOD:4]GAM[UNIMOD:35]LADC[UNIMOD:4]DRER"/> <protein_id>decoy_ENSP00000244741.5</protein_id> <protein_id>decoy_ENSP00000362815.1</protein_id> <protein_id>decoy_ENSP00000384849.1</protein_id> <protein_id>decoy_ENSP00000482768.1</protein_id> <protein_id>decoy_ENSP00000409259.3</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_10027_1_10027_5_1" p:decoy="true"> <svm_score>-1.664</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>817.9920</exp_mass> <calc_mass>817.589</calc_mass> <peptide_seq n="R" c="Y" seq="[UNIMOD:737]DQM[UNIMOD:35]YHHYGYIGQVVYIMGTEMNPPNLYTHPNR"/> <protein_id>decoy_ENSP00000264689.6</protein_id> <protein_id>decoy_ENSP00000421133.1</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_7379_1_7379_2_1" p:decoy="true"> <svm_score>-1.666</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>456.2220</exp_mass> <calc_mass>455.716</calc_mass> <peptide_seq n="K" c="T" seq="[UNIMOD:737]SGDSC[UNIMOD:4]R"/> <protein_id>decoy_ENSP00000243501.5</protein_id> <protein_id>decoy_ENSP00000425274.1</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_5881_1_5881_2_1" p:decoy="true"> <svm_score>-1.672</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>441.1980</exp_mass> <calc_mass>441.197</calc_mass> <peptide_seq n="R" c="-" seq="[UNIMOD:737]ADGNEM[UNIMOD:35]"/> <protein_id>decoy_ENSP00000340211.5</protein_id> <protein_id>decoy_ENSP00000377471.1</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_5296_1_5296_2_1" p:decoy="true"> <svm_score>-1.673</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>465.7180</exp_mass> <calc_mass>465.215</calc_mass> <peptide_seq n="K" c="-" seq="[UNIMOD:737]AC[UNIMOD:4]TYAD"/> <protein_id>decoy_ENSP00000482058.1</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_9535_1_9535_3_1" p:decoy="true"> <svm_score>-1.682</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>696.9320</exp_mass> <calc_mass>696.262</calc_mass> <peptide_seq n="K" c="-" seq="[UNIMOD:737]DSSDDDDDDDSMDNLPS"/> <protein_id>decoy_ENSP00000322373.3</protein_id> <protein_id>decoy_ENSP00000427792.1</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_6830_1_6830_2_1" p:decoy="true"> <svm_score>-1.704</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>405.6980</exp_mass> <calc_mass>405.697</calc_mass> <peptide_seq n="K" c="-" seq="[UNIMOD:737]GASSEM"/> <protein_id>decoy_ENSP00000387702.2</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_7099_1_7099_2_1" p:decoy="true"> <svm_score>-1.723</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>437.2190</exp_mass> <calc_mass>437.718</calc_mass> <peptide_seq n="R" c="-" seq="[UNIMOD:737]GDSVHM"/> <protein_id>decoy_ENSP00000349803.3</protein_id> <protein_id>decoy_ENSP00000420324.1</protein_id> <protein_id>decoy_ENSP00000418092.1</protein_id> <protein_id>decoy_ENSP00000419902.1</protein_id> <protein_id>decoy_ENSP00000419153.1</protein_id> <protein_id>decoy_ENSP00000417307.1</protein_id> <protein_id>decoy_ENSP00000377375.2</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_5658_1_5658_2_1" p:decoy="true"> <svm_score>-1.728</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>398.6900</exp_mass> <calc_mass>397.687</calc_mass> <peptide_seq n="K" c="-" seq="[UNIMOD:737]GSGC[UNIMOD:4]AN"/> <protein_id>decoy_ENSP00000434438.1</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_6150_1_6150_2_1" p:decoy="true"> <svm_score>-1.738</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>405.6980</exp_mass> <calc_mass>405.196</calc_mass> <peptide_seq n="K" c="-" seq="[UNIMOD:737]GVC[UNIMOD:4]MGG"/> <protein_id>decoy_ENSP00000421279.1</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_5487_1_5487_2_1" p:decoy="true"> <svm_score>-1.765</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>426.7030</exp_mass> <calc_mass>426.699</calc_mass> <peptide_seq n="K" c="-" seq="[UNIMOD:737]AC[UNIMOD:4]NGMA"/> <protein_id>decoy_ENSP00000427514.1</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_6279_1_6279_2_1" p:decoy="true"> <svm_score>-1.782</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>428.6990</exp_mass> <calc_mass>427.692</calc_mass> <peptide_seq n="K" c="-" seq="[UNIMOD:737]DDATM[UNIMOD:35]G"/> <protein_id>decoy_ENSP00000316809.7</protein_id> <protein_id>decoy_ENSP00000441869.1</protein_id> <p_value>0.000e+00</p_value> </psm> <psm p:psm_id="dataset_88023_SII_10067_1_10067_6_1" p:decoy="true"> <svm_score>-1.862</svm_score> <q_value>1.000e+00</q_value> <pep>1.000e+00</pep> <exp_mass>854.9230</exp_mass> <calc_mass>854.916</calc_mass> <peptide_seq n="K" c="D" seq="[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]DK[UNIMOD:737]EK[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]K[UNIMOD:737]EEK[UNIMOD:737]SK[UNIMOD:737]"/> <protein_id>decoy_ENSP00000384264.3</protein_id> <protein_id>decoy_ENSP00000426862.1</protein_id> <protein_id>decoy_ENSP00000389881.2</protein_id> <protein_id>decoy_ENSP00000443401.2</protein_id> <protein_id>decoy_ENSP00000351320.4</protein_id> <p_value>0.000e+00</p_value> </psm> </psms> </percolator_output>