Mercurial > repos > galaxyp > percolator

view test-data/target_ds2_withperco.mzid @ 6:07107a686ce9 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tools/percolator commit de8cdf895c3c6113f301a119788701b2465a1b1b"
author galaxyp
date Thu, 13 Aug 2020 03:53:33 -0400
parents 7a0951d0e13e
children
line wrap: on
line source

<?xml version="1.0" encoding="UTF-8"?>
<MzIdentML id="MS-GF+" version="1.1.0" xmlns="http://psidev.info/psi/pi/mzIdentML/1.1" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd" creationDate="2017-03-01T15:00:34" >
<cvList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
    <cv id="PSI-MS" uri="http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo" version="3.30.0" fullName="PSI-MS"/>
    <cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo" fullName="UNIMOD"/>
    <cv id="UO" uri="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo" fullName="UNIT-ONTOLOGY"/>
</cvList>
<AnalysisSoftwareList xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
    <AnalysisSoftware version="Beta (v10072)" name="MS-GF+" id="ID_software">
        <SoftwareName>
            <cvParam accession="MS:1002048" cvRef="PSI-MS" name="MS-GF+"/>
        </SoftwareName>
    </AnalysisSoftware>
</AnalysisSoftwareList>
<AnalysisCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
    <SpectrumIdentification spectrumIdentificationList_ref="SI_LIST_1" spectrumIdentificationProtocol_ref="SearchProtocol_1" id="SpecIdent_1">
        <InputSpectra spectraData_ref="SID_1"/>
        <SearchDatabaseRef searchDatabase_ref="SearchDB_1"/>
    </SpectrumIdentification>
</AnalysisCollection>
<AnalysisProtocolCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
    <SpectrumIdentificationProtocol analysisSoftware_ref="ID_software" id="SearchProtocol_1">
        <SearchType>
            <cvParam accession="MS:1001083" cvRef="PSI-MS" name="ms-ms search"/>
        </SearchType>
        <AdditionalSearchParams>
            <cvParam accession="MS:1001211" cvRef="PSI-MS" name="parent mass type mono"/>
            <cvParam accession="MS:1001256" cvRef="PSI-MS" name="fragment mass type mono"/>
            <userParam value="false" name="TargetDecoyApproach"/>
            <userParam value="-1" name="MinIsotopeError"/>
            <userParam value="2" name="MaxIsotopeError"/>
            <userParam value="HCD" name="FragmentMethod"/>
            <userParam value="QExactive" name="Instrument"/>
            <userParam value="TMT" name="Protocol"/>
            <userParam value="2" name="NumTolerableTermini"/>
            <userParam value="1" name="NumMatchesPerSpec"/>
            <userParam value="2" name="MaxNumModifications"/>
            <userParam value="6" name="MinPepLength"/>
            <userParam value="50" name="MaxPepLength"/>
            <userParam value="2" name="MinCharge"/>
            <userParam value="6" name="MaxCharge"/>
        </AdditionalSearchParams>
        <ModificationParams>
            <SearchModification residues="M" massDelta="15.994915" fixedMod="false">
                <cvParam accession="UNIMOD:35" cvRef="UNIMOD" name="Oxidation"/>
            </SearchModification>
            <SearchModification residues="C" massDelta="57.021465" fixedMod="true">
                <cvParam accession="UNIMOD:4" cvRef="UNIMOD" name="Carbamidomethyl"/>
            </SearchModification>
            <SearchModification residues="K" massDelta="229.16293" fixedMod="true">
                <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
            </SearchModification>
            <SearchModification residues="." massDelta="229.16293" fixedMod="true">
                <SpecificityRules>
                    <cvParam accession="MS:1001189" cvRef="PSI-MS" name="modification specificity N-term"/>
                </SpecificityRules>
                <cvParam accession="UNIMOD:737" cvRef="UNIMOD" name="TMT6plex"/>
            </SearchModification>
        </ModificationParams>
        <Enzymes>
            <Enzyme missedCleavages="1000" semiSpecific="false" id="Tryp">
                <EnzymeName>
                    <cvParam accession="MS:1001251" cvRef="PSI-MS" name="Trypsin"/>
                </EnzymeName>
            </Enzyme>
        </Enzymes>
        <ParentTolerance>
            <cvParam accession="MS:1001412" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance plus value"/>
            <cvParam accession="MS:1001413" cvRef="PSI-MS" unitCvRef="UO" unitName="parts per million" unitAccession="UO:0000169" value="10.0" name="search tolerance minus value"/>
        </ParentTolerance>
        <Threshold>
            <cvParam accession="MS:1001494" cvRef="PSI-MS" name="no threshold"/>
        </Threshold>
    </SpectrumIdentificationProtocol>
</AnalysisProtocolCollection>
<DataCollection xmlns="http://psidev.info/psi/pi/mzIdentML/1.1">
    <Inputs>
        <SearchDatabase numDatabaseSequences="102915" location="/mnt/galaxy/data/job_working_directory/000/235/235188/working/dbase.fasta" id="SearchDB_1">
            <FileFormat>
                <cvParam accession="MS:1001348" cvRef="PSI-MS" name="FASTA format"/>
            </FileFormat>
            <DatabaseName>
                <userParam name="dbase.fasta"/>
            </DatabaseName>
        </SearchDatabase>
        <SpectraData location="/tmp/tmp_OeEkM/dataset_362460.dat.mzml" name="dataset_362460.dat.mzml" id="SID_1">
            <FileFormat>
                <cvParam accession="MS:1000584" cvRef="PSI-MS" name="mzML file"/>
            </FileFormat>
            <SpectrumIDFormat>
                <cvParam accession="MS:1000768" cvRef="PSI-MS" name="Thermo nativeID format"/>
            </SpectrumIDFormat>
        </SpectraData>
    </Inputs>
    <AnalysisData>
        <SpectrumIdentificationList id="SI_LIST_1">
            <FragmentationTable>
                <Measure id="Measure_MZ">
                    <cvParam accession="MS:1001225" cvRef="PSI-MS" unitCvRef="PSI-MS" unitName="m/z" unitAccession="MS:1000040" name="product ion m/z"/>
                </Measure>
            </FragmentationTable>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9576" id="SIR_77">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep362" calculatedMassToCharge="420.2504577636719" experimentalMassToCharge="419.74969482421875" chargeState="2" id="SII_77_1">
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_31443849_362_176"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_31444212_362_184"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_31444767_362_176"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_31445005_362_193"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_31445234_362_184"/>
                    <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-35" name="MS-GF:RawScore"/>
                    <cvParam accession="MS:1002050" cvRef="PSI-MS" value="1" name="MS-GF:DeNovoScore"/>
                    <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0038289425" name="MS-GF:SpecEValue"/>
                    <cvParam accession="MS:1002053" cvRef="PSI-MS" value="42844.62" name="MS-GF:EValue"/>
                    <userParam value="-1" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                    <userParam value="0.008446768" name="ExplainedIonCurrentRatio"/>
                    <userParam value="0.0048889467" name="NTermIonCurrentRatio"/>
                    <userParam value="0.003557821" name="CTermIonCurrentRatio"/>
                    <userParam value="979701.5" name="MS2IonCurrent"/>
                    <userParam value="4" name="NumMatchedMainIons"/>
                    <userParam value="7.9951363" name="MeanErrorAll"/>
                    <userParam value="4.7648582" name="StdevErrorAll"/>
                    <userParam value="7.9951363" name="MeanErrorTop7"/>
                    <userParam value="4.7648582" name="StdevErrorTop7"/>
                    <userParam value="0.79569435" name="MeanRelErrorAll"/>
                    <userParam value="9.273238" name="StdevRelErrorAll"/>
                    <userParam value="0.79569435" name="MeanRelErrorTop7"/>
                    <userParam value="9.273238" name="StdevRelErrorTop7"/>
                </SpectrumIdentificationItem>
                <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9576" name="scan number(s)"/>
            </SpectrumIdentificationResult>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9739" id="SIR_240">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep363" calculatedMassToCharge="1044.435546875" experimentalMassToCharge="1045.4466552734375" chargeState="2" id="SII_240_1">
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_36274231_363_1"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_36275421_363_1"/>
                    <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-75" name="MS-GF:RawScore"/>
                    <cvParam accession="MS:1002050" cvRef="PSI-MS" value="203" name="MS-GF:DeNovoScore"/>
                    <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0039381883" name="MS-GF:SpecEValue"/>
                    <cvParam accession="MS:1002053" cvRef="PSI-MS" value="49910.527" name="MS-GF:EValue"/>
                    <userParam value="2" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                    <userParam value="0.04388853" name="ExplainedIonCurrentRatio"/>
                    <userParam value="0.0018504228" name="NTermIonCurrentRatio"/>
                    <userParam value="0.04203811" name="CTermIonCurrentRatio"/>
                    <userParam value="211725.44" name="MS2IonCurrent"/>
                    <userParam value="3" name="NumMatchedMainIons"/>
                    <userParam value="5.0645747" name="MeanErrorAll"/>
                    <userParam value="4.3375416" name="StdevErrorAll"/>
                    <userParam value="5.0645747" name="MeanErrorTop7"/>
                    <userParam value="4.3375416" name="StdevErrorTop7"/>
                    <userParam value="-5.0645747" name="MeanRelErrorAll"/>
                    <userParam value="4.3375416" name="StdevRelErrorAll"/>
                    <userParam value="-5.0645747" name="MeanRelErrorTop7"/>
                    <userParam value="4.3375416" name="StdevRelErrorTop7"/>
                    <userParam name="percolator:score" value="-1.404"/>
                    <userParam name="percolator:psm_p_value" value="0.000e+00"/>
                    <userParam name="percolator:psm_q_value" value="1.000e+00"/>
                    <userParam name="percolator:psm_pep" value="1.000e+00"/>
                    <userParam name="percolator:peptide_q_value" value="1.000e+00"/>
                    <userParam name="percolator:peptide_pep" value="1.000e+00"/>
                </SpectrumIdentificationItem>
                <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9739" name="scan number(s)"/>
            </SpectrumIdentificationResult>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9624" id="SIR_125">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep364" calculatedMassToCharge="412.7393798828125" experimentalMassToCharge="412.7425537109375" chargeState="2" id="SII_125_1">
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2217873_364_124"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2218487_364_118"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2219651_364_124"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2220892_364_124"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2221016_364_118"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2222191_364_118"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2223367_364_124"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2223824_364_94"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2224990_364_94"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2226818_364_124"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2228053_364_118"/>
                    <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-36" name="MS-GF:RawScore"/>
                    <cvParam accession="MS:1002050" cvRef="PSI-MS" value="7" name="MS-GF:DeNovoScore"/>
                    <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.0041994834" name="MS-GF:SpecEValue"/>
                    <cvParam accession="MS:1002053" cvRef="PSI-MS" value="46990.855" name="MS-GF:EValue"/>
                    <userParam value="0" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                    <userParam value="0.022749394" name="ExplainedIonCurrentRatio"/>
                    <userParam value="0.0055547007" name="NTermIonCurrentRatio"/>
                    <userParam value="0.017194694" name="CTermIonCurrentRatio"/>
                    <userParam value="1108970.5" name="MS2IonCurrent"/>
                    <userParam value="3" name="NumMatchedMainIons"/>
                    <userParam value="12.467069" name="MeanErrorAll"/>
                    <userParam value="2.0159998" name="StdevErrorAll"/>
                    <userParam value="12.467069" name="MeanErrorTop7"/>
                    <userParam value="2.0159998" name="StdevErrorTop7"/>
                    <userParam value="-12.467069" name="MeanRelErrorAll"/>
                    <userParam value="2.0159998" name="StdevRelErrorAll"/>
                    <userParam value="-12.467069" name="MeanRelErrorTop7"/>
                    <userParam value="2.0159998" name="StdevRelErrorTop7"/>
                </SpectrumIdentificationItem>
                <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9624" name="scan number(s)"/>
            </SpectrumIdentificationResult>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9597" id="SIR_98">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep365" calculatedMassToCharge="374.7237548828125" experimentalMassToCharge="375.2268981933594" chargeState="2" id="SII_98_1">
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931023_365_179"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931096_365_67"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2931458_365_179"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2932034_365_179"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2932586_365_179"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2933094_365_179"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_2933788_365_91"/>
                    <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-31" name="MS-GF:RawScore"/>
                    <cvParam accession="MS:1002050" cvRef="PSI-MS" value="12" name="MS-GF:DeNovoScore"/>
                    <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.007490085" name="MS-GF:SpecEValue"/>
                    <cvParam accession="MS:1002053" cvRef="PSI-MS" value="83811.62" name="MS-GF:EValue"/>
                    <userParam value="1" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                    <userParam value="0.002810515" name="ExplainedIonCurrentRatio"/>
                    <userParam value="0.0010880833" name="NTermIonCurrentRatio"/>
                    <userParam value="0.0017224317" name="CTermIonCurrentRatio"/>
                    <userParam value="1322425.9" name="MS2IonCurrent"/>
                    <userParam value="4" name="NumMatchedMainIons"/>
                    <userParam value="10.769573" name="MeanErrorAll"/>
                    <userParam value="6.174447" name="StdevErrorAll"/>
                    <userParam value="10.769573" name="MeanErrorTop7"/>
                    <userParam value="6.174447" name="StdevErrorTop7"/>
                    <userParam value="-10.314375" name="MeanRelErrorAll"/>
                    <userParam value="6.908051" name="StdevRelErrorAll"/>
                    <userParam value="-10.314375" name="MeanRelErrorTop7"/>
                    <userParam value="6.908051" name="StdevRelErrorTop7"/>
                </SpectrumIdentificationItem>
                <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9597" name="scan number(s)"/>
            </SpectrumIdentificationResult>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9535" id="SIR_36">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep366" calculatedMassToCharge="696.261962890625" experimentalMassToCharge="696.9315795898438" chargeState="3" id="SII_36_1">
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_13424467_366_233"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_13424717_366_233"/>
                    <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-63" name="MS-GF:RawScore"/>
                    <cvParam accession="MS:1002050" cvRef="PSI-MS" value="57" name="MS-GF:DeNovoScore"/>
                    <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.009250706" name="MS-GF:SpecEValue"/>
                    <cvParam accession="MS:1002053" cvRef="PSI-MS" value="120076.12" name="MS-GF:EValue"/>
                    <userParam value="2" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                    <userParam value="0.0" name="ExplainedIonCurrentRatio"/>
                    <userParam value="0.0" name="NTermIonCurrentRatio"/>
                    <userParam value="0.0" name="CTermIonCurrentRatio"/>
                    <userParam value="970208.1" name="MS2IonCurrent"/>
                </SpectrumIdentificationItem>
                <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9535" name="scan number(s)"/>
            </SpectrumIdentificationResult>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9536" id="SIR_37">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep367" calculatedMassToCharge="716.6107788085938" experimentalMassToCharge="716.2726440429688" chargeState="3" id="SII_37_1">
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_4045574_367_1163"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_4046878_367_1210"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_4047185_367_213"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_4047445_367_166"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_4048179_367_640"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_4049204_367_814"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_4049464_367_166"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_4050765_367_1121"/>
                    <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-70" name="MS-GF:RawScore"/>
                    <cvParam accession="MS:1002050" cvRef="PSI-MS" value="58" name="MS-GF:DeNovoScore"/>
                    <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.01311507" name="MS-GF:SpecEValue"/>
                    <cvParam accession="MS:1002053" cvRef="PSI-MS" value="168936.39" name="MS-GF:EValue"/>
                    <userParam value="-1" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                    <userParam value="0.021191442" name="ExplainedIonCurrentRatio"/>
                    <userParam value="0.021191442" name="NTermIonCurrentRatio"/>
                    <userParam value="0.0" name="CTermIonCurrentRatio"/>
                    <userParam value="458822.22" name="MS2IonCurrent"/>
                    <userParam value="1" name="NumMatchedMainIons"/>
                    <userParam value="7.1771297" name="MeanErrorAll"/>
                    <userParam value="0.0" name="StdevErrorAll"/>
                    <userParam value="7.1771297" name="MeanErrorTop7"/>
                    <userParam value="0.0" name="StdevErrorTop7"/>
                    <userParam value="7.1771297" name="MeanRelErrorAll"/>
                    <userParam value="0.0" name="StdevRelErrorAll"/>
                    <userParam value="7.1771297" name="MeanRelErrorTop7"/>
                    <userParam value="0.0" name="StdevRelErrorTop7"/>
                </SpectrumIdentificationItem>
                <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9536" name="scan number(s)"/>
            </SpectrumIdentificationResult>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9562" id="SIR_63">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep368" calculatedMassToCharge="381.7315673828125" experimentalMassToCharge="382.2348937988281" chargeState="2" id="SII_63_1">
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_23957849_368_59"/>
                    <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-37" name="MS-GF:RawScore"/>
                    <cvParam accession="MS:1002050" cvRef="PSI-MS" value="2" name="MS-GF:DeNovoScore"/>
                    <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.013180328" name="MS-GF:SpecEValue"/>
                    <cvParam accession="MS:1002053" cvRef="PSI-MS" value="147483.58" name="MS-GF:EValue"/>
                    <userParam value="1" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                    <userParam value="0.029766617" name="ExplainedIonCurrentRatio"/>
                    <userParam value="0.0065177265" name="NTermIonCurrentRatio"/>
                    <userParam value="0.02324889" name="CTermIonCurrentRatio"/>
                    <userParam value="1004098.9" name="MS2IonCurrent"/>
                    <userParam value="5" name="NumMatchedMainIons"/>
                    <userParam value="6.8986616" name="MeanErrorAll"/>
                    <userParam value="3.4906154" name="StdevErrorAll"/>
                    <userParam value="6.8986616" name="MeanErrorTop7"/>
                    <userParam value="3.4906154" name="StdevErrorTop7"/>
                    <userParam value="-4.629228" name="MeanRelErrorAll"/>
                    <userParam value="6.192429" name="StdevRelErrorAll"/>
                    <userParam value="-4.629228" name="MeanRelErrorTop7"/>
                    <userParam value="6.192429" name="StdevRelErrorTop7"/>
                    <userParam name="percolator:score" value="-1.147"/>
                    <userParam name="percolator:psm_p_value" value="0.000e+00"/>
                    <userParam name="percolator:psm_q_value" value="1.000e+00"/>
                    <userParam name="percolator:psm_pep" value="1.000e+00"/>
                    <userParam name="percolator:peptide_q_value" value="1.000e+00"/>
                    <userParam name="percolator:peptide_pep" value="1.000e+00"/>
                </SpectrumIdentificationItem>
                <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9562" name="scan number(s)"/>
            </SpectrumIdentificationResult>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9802" id="SIR_303">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep369" calculatedMassToCharge="402.7550354003906" experimentalMassToCharge="403.25836181640625" chargeState="2" id="SII_303_1">
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_20983112_369_271"/>
                    <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-38" name="MS-GF:RawScore"/>
                    <cvParam accession="MS:1002050" cvRef="PSI-MS" value="6" name="MS-GF:DeNovoScore"/>
                    <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.014048123" name="MS-GF:SpecEValue"/>
                    <cvParam accession="MS:1002053" cvRef="PSI-MS" value="157193.92" name="MS-GF:EValue"/>
                    <userParam value="1" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                    <userParam value="0.022009742" name="ExplainedIonCurrentRatio"/>
                    <userParam value="0.0014010341" name="NTermIonCurrentRatio"/>
                    <userParam value="0.020608708" name="CTermIonCurrentRatio"/>
                    <userParam value="564391.6" name="MS2IonCurrent"/>
                    <userParam value="4" name="NumMatchedMainIons"/>
                    <userParam value="6.9542007" name="MeanErrorAll"/>
                    <userParam value="3.3916576" name="StdevErrorAll"/>
                    <userParam value="6.9542007" name="MeanErrorTop7"/>
                    <userParam value="3.3916576" name="StdevErrorTop7"/>
                    <userParam value="-3.5387955" name="MeanRelErrorAll"/>
                    <userParam value="6.8804927" name="StdevRelErrorAll"/>
                    <userParam value="-3.5387955" name="MeanRelErrorTop7"/>
                    <userParam value="6.8804927" name="StdevRelErrorTop7"/>
                </SpectrumIdentificationItem>
                <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9802" name="scan number(s)"/>
            </SpectrumIdentificationResult>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9594" id="SIR_95">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep370" calculatedMassToCharge="397.7341003417969" experimentalMassToCharge="397.7373352050781" chargeState="2" id="SII_95_1">
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_26265098_370_442"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_26265620_370_450"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_29673543_370_160"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_32435502_370_1129"/>
                    <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-51" name="MS-GF:RawScore"/>
                    <cvParam accession="MS:1002050" cvRef="PSI-MS" value="13" name="MS-GF:DeNovoScore"/>
                    <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.021325951" name="MS-GF:SpecEValue"/>
                    <cvParam accession="MS:1002053" cvRef="PSI-MS" value="238630.45" name="MS-GF:EValue"/>
                    <userParam value="0" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                    <userParam value="0.030569095" name="ExplainedIonCurrentRatio"/>
                    <userParam value="0.00203066" name="NTermIonCurrentRatio"/>
                    <userParam value="0.028538436" name="CTermIonCurrentRatio"/>
                    <userParam value="1176358.8" name="MS2IonCurrent"/>
                    <userParam value="4" name="NumMatchedMainIons"/>
                    <userParam value="7.255852" name="MeanErrorAll"/>
                    <userParam value="3.8946548" name="StdevErrorAll"/>
                    <userParam value="7.255852" name="MeanErrorTop7"/>
                    <userParam value="3.8946548" name="StdevErrorTop7"/>
                    <userParam value="-2.0970254" name="MeanRelErrorAll"/>
                    <userParam value="7.9635553" name="StdevRelErrorAll"/>
                    <userParam value="-2.0970254" name="MeanRelErrorTop7"/>
                    <userParam value="7.9635553" name="StdevRelErrorTop7"/>
                </SpectrumIdentificationItem>
                <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9594" name="scan number(s)"/>
            </SpectrumIdentificationResult>
            <SpectrumIdentificationResult spectraData_ref="SID_1" spectrumID="controllerType=0 controllerNumber=1 scan=9681" id="SIR_182">
                <SpectrumIdentificationItem passThreshold="true" rank="1" peptide_ref="Pep371" calculatedMassToCharge="388.7393798828125" experimentalMassToCharge="389.2425537109375" chargeState="2" id="SII_182_1">
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_8122661_371_164"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_8122856_371_29"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_8123174_371_89"/>
                    <PeptideEvidenceRef peptideEvidence_ref="PepEv_8123331_371_113"/>
                    <cvParam accession="MS:1002049" cvRef="PSI-MS" value="-63" name="MS-GF:RawScore"/>
                    <cvParam accession="MS:1002050" cvRef="PSI-MS" value="12" name="MS-GF:DeNovoScore"/>
                    <cvParam accession="MS:1002052" cvRef="PSI-MS" value="0.041115593" name="MS-GF:SpecEValue"/>
                    <cvParam accession="MS:1002053" cvRef="PSI-MS" value="460070.12" name="MS-GF:EValue"/>
                    <userParam value="1" name="IsotopeError"/>
                    <userParam value="HCD" name="AssumedDissociationMethod"/>
                    <userParam value="0.0032015902" name="ExplainedIonCurrentRatio"/>
                    <userParam value="6.9299503E-4" name="NTermIonCurrentRatio"/>
                    <userParam value="0.0025085951" name="CTermIonCurrentRatio"/>
                    <userParam value="1018012.9" name="MS2IonCurrent"/>
                    <userParam value="3" name="NumMatchedMainIons"/>
                    <userParam value="9.696182" name="MeanErrorAll"/>
                    <userParam value="1.2990792" name="StdevErrorAll"/>
                    <userParam value="9.696182" name="MeanErrorTop7"/>
                    <userParam value="1.2990792" name="StdevErrorTop7"/>
                    <userParam value="-9.696182" name="MeanRelErrorAll"/>
                    <userParam value="1.2990792" name="StdevRelErrorAll"/>
                    <userParam value="-9.696182" name="MeanRelErrorTop7"/>
                    <userParam value="1.2990792" name="StdevRelErrorTop7"/>
                </SpectrumIdentificationItem>
                <cvParam accession="MS:1001115" cvRef="PSI-MS" value="9681" name="scan number(s)"/>
            </SpectrumIdentificationResult>
        </SpectrumIdentificationList>
    </AnalysisData>
</DataCollection>
</MzIdentML>