Mercurial > repos > galaxyp > pmd_fdr
diff PMD_FDR_package_for_Galaxy.R @ 1:460edeedeb7d draft default tip
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/pmd_fdr commit d87c44ec8fd5bc03d7bb06f65a1a6ec247daee36"
| author | galaxyp |
|---|---|
| date | Thu, 10 Oct 2019 17:29:37 -0400 |
| parents | 5cc0c32d05a2 |
| children |
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--- a/PMD_FDR_package_for_Galaxy.R Mon Oct 07 11:59:37 2019 -0400 +++ b/PMD_FDR_package_for_Galaxy.R Thu Oct 10 17:29:37 2019 -0400 @@ -2945,10 +2945,9 @@ local_add_argument("--output_g_fdr" , default = "" , help="full name and path to the g-FDR output file ") local_add_argument("--output_densities" , default = "" , help="full name and path to the densities output file ") #local_add_argument("--score_field_name" , default = "" , help="name of score field (in R format)") - local_add_argument("--input_file_type" , default = "PMD_FDR_input_file", help="type of input file (currently supports: PSM_Report)") + local_add_argument("--input_file_type" , default = "PMD_FDR_input_file", help="type of input file (currently supports: PMD_FDR_file_type, PSM_Report, MaxQuant_Evidence)") } -) -############################################################################### +)############################################################################### # Class: Data_Object_Parser ############################################################################### Data_Object_Parser <- setRefClass("Data_Object_Parser",