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comparison proteinpilot_tabular.xml @ 8:0aa9d080713e

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Update for ProteinPilot version 5.0
author Jim Johnson <jj@umn.edu>
date Thu, 05 Nov 2015 13:15:48 -0600
parents ffbfff887a03
children
comparison
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7:ffbfff887a03 8:0aa9d080713e
1 <tool id="proteinpilot_tabular" version="0.1" name="ProteinPilot - Convert Group to Tabular"> 1 <tool id="proteinpilot_tabular" name="ProteinPilot - Convert Group to Tabular" version="5.0.0">
2 <description></description> 2 <description></description>
3 <!-- TOOD: Implement wrapper allowing Windows newlines to be replaced. --> 3 <!-- TOOD: Implement wrapper allowing Windows newlines to be replaced. -->
4 <command> 4 <command>
5 #if $quant.use 5 #if $quant.use
6 #set $denom = $quant.dtype 6 #set $denom = $quant.dtype
7 #else 7 #else
8 #set $denom = "" 8 #set $denom = ""
9 #end if 9 #end if
10 group2xml.exe ${ptype} $input $output $denom 10 GroupFileExtractor.exe ${ptype} $input $output $denom
11 </command> 11 </command>
12 <inputs> 12 <inputs>
13 <param format="group" name="input" type="data" label="ProteinPilot Group Data" help=""/> 13 <param format="group" name="input" type="data" label="ProteinPilot Group Data" help=""/>
14 <param name="ptype" type="select" label="Summary Type"> 14 <param name="ptype" type="select" label="Summary Type">
15 <option value="PROTEIN">Protein</option> 15 <option value="PROTEIN">Protein</option>